Array 1 390586-391162 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATEU01000022.1 Salmonella enterica subsp. enterica serovar Cubana str. CVM42234 cvm42234_contig021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 390586 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 390647 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 390708 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 390769 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 390830 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 390891 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 390952 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 391013 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 391074 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 391135 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 408396-410502 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATEU01000022.1 Salmonella enterica subsp. enterica serovar Cubana str. CVM42234 cvm42234_contig021, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 408396 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 408457 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 408518 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 408579 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 408640 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 408701 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 408762 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 408823 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 408884 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 408945 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 409006 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 409067 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 409128 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 409189 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 409250 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 409311 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 409372 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 409433 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 409494 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 409555 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 409616 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 409677 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 409741 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 409802 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 409863 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 409924 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 409985 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 410046 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 410107 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 410168 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 410229 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 410290 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 410351 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 410412 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 410473 29 93.1 0 A...........T................ | A [410499] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //