Array 1 234710-236263 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEX01000002.1 Escherichia coli strain MOD1-EC6016 MOD1-EC6016_2_length_355739_cov_44.4196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 234710 29 100.0 32 ............................. GCTATCGCAGCAACACCCCAGCAGGAGCACAC 234771 29 96.6 32 ............................T CCCACTTCCCGCGCTCCATATCGATGATATAC 234832 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 234893 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 234954 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 235015 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 235076 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 235137 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 235198 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 235259 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 235320 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 235381 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 235442 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 235503 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 235564 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 235625 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 235686 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 235747 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 235808 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 235869 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 235930 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 235991 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 236052 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 236113 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 236174 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 236235 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 261964-262297 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMEX01000002.1 Escherichia coli strain MOD1-EC6016 MOD1-EC6016_2_length_355739_cov_44.4196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 261964 29 100.0 32 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCG 262025 29 100.0 32 ............................. ACTATATATTTCCTCAACGAGTAATTTTGAAT 262086 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 262147 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 262208 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 262269 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //