Array 1 1247-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOM01000120.1 Serratia marcescens strain 907_SMAR 302_24070_639556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1246 28 100.0 32 ............................ ATTGGGGCGGCTTCGATAAGCAAGACGTGAAC 1186 28 100.0 32 ............................ GTACTGCTTAGCCGCTTTTTCCATCGCACGAA 1126 28 100.0 32 ............................ AATATTCCGCCACCGTGGCGAGCGCAACACTG 1066 28 100.0 32 ............................ TGAAGCGCCAGCAGTTCCGACTCTGCGCTATC 1006 28 100.0 32 ............................ AACAACAGGGACAAGCCCTGGTCGAACCTTGC 946 28 100.0 32 ............................ AGATCGAACGTGGCAACGGAACAGCTTGCGGC 886 28 100.0 32 ............................ TTATCAGCGATCTGGCGCTGCTGGTGCCGCTC 826 28 100.0 32 ............................ AAGCAGGTGCATTCAACGGTCAAAGTTACCCA 766 28 100.0 32 ............................ ATTTCCCCTTCGGCGGCCACGTCGCCGGAAAC 706 28 100.0 33 ............................ AGAAAACTTGTAGGCGCCATCTTCATTCTTCAT 645 28 100.0 33 ............................ GTTTATCGCCGTGCCGTTCACCATGGACAACAA 584 28 100.0 32 ............................ CTGTTTTGAGAATGCACCACTGCGCGCCGTTC 524 28 100.0 32 ............................ CACTTCGCCAGCAGCCGGCCGGCCAGTGCGGC 464 28 100.0 32 ............................ AGCAGGATGAGCTGGTAAAGACGAAACGACAT 404 28 100.0 32 ............................ TTCGCGACGCGCTGCTTCCACGCCCGGCGCTC 344 28 100.0 32 ............................ TGTCGAACTGCACCCCCGGCGCAATAAACGCC 284 28 100.0 32 ............................ TGGGGTGATTGCATGTTTTCCGCCGGCGTGGT 224 28 100.0 32 ............................ ATGATTAAATCCAGATCGCCGGTATAGTCCAA 164 28 100.0 32 ............................ CGGGCGTGTCGTGTGACCGACGACGCAATCGC 104 28 92.9 32 CC.......................... TGGCTGGGTTTGAACGTTTGTCTGTTACACAC 44 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGTTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCACCGTTTAATCGCTTCTAGCACTCGGCAACAAATACTCCAACGATAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTCTTTTGCTCAGCTGTTTGAGCTGACAATCCAGGTCTTCTGTGGTGTCTATGCGTCTGAGAGAAACGGATGGTGATACCGAACAGGGAATCCAATAATTCCCCCCTAAAAATGCAGACACGCCACCTTACTCCGTTCTGGGTTGCCGAACCCTTTTTTGAGCGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAATCTGGATCGGAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5533-4784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOM01000120.1 Serratia marcescens strain 907_SMAR 302_24070_639556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5532 28 100.0 32 ............................ TGCAACGTTTACATTCAATCCCGCGAGGATGC 5472 28 100.0 32 ............................ AATGACCTCAGCACAACAATCAACAATTTCAT 5412 28 100.0 32 ............................ AGCCAGAGTAACCGGTGCCAGCGGCGGACAGC 5352 28 100.0 32 ............................ CCTCCATCCCAAAACGCGGTTACCGTCGCCGC 5292 28 100.0 32 ............................ AAAGGTATGGGAGCGGAGCGCAAGGCAGAAAG 5232 28 96.4 32 .................T.......... AATGGGGAATGTTCGTAAAACTCACAGAAAAC 5172 28 100.0 32 ............................ ATTACAGAACTGGGATATTCGCCCAGGACTAC 5112 28 100.0 32 ............................ AGCGCTGCCGCCCTTGCGAGTACGGTTTGAAG 5052 28 100.0 32 ............................ CGAACACGGCGCTGCTGTATGTGGAGTTCGAC 4992 28 100.0 32 ............................ TGGGTGATCAGCAGCTCTGCCAGGCGCGTCTT 4932 28 100.0 32 ............................ ATATCGATTAGCCCTCTCGATAGCGAGCCGGG 4872 28 96.4 32 .................T.......... TGGCTGGTGGATTTGCGGATAACTTCGTTGTG 4812 28 85.7 0 ....................A...ATG. | C [4786] ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTGCTGGCGGTACTGGGGCTGGGCAAGCTGGTGACCGAGTGCCTACGCAGCGTCGAAATGATCTACCTGACGCTGGCGTTCATCACCACGCCGATCTTCTACCTGTCCGGCACCATCTGGCCGTTGCAGTCGATGCCGGCCTGGGTGCGCGCCATCTCGTACAGCATTCCCTCCACCTGGGGCACCAAGGCGATCGCGGGCGTCAACCAGATGGGGCTGTCGCTGAATGAAGTGTGGGGCGACGTGATGATGATGCTGGTGCTCGGCGTGGTCTACACCATGCTGGGCTTCGGCATCGGCTTCTTGCGCAACAGCGTGGCGCTGCGCGGGATGTTCAGGAAGCGGCGGGCTAGTTGATCCCCTCATTGACCCTTTTTTTGGCGACTATAATTAATGCTTTTAATTTCAATAAAATGCATTCTCTGCCGAAAAAAGGGTTCTGGGATGAGTAAGGGCGATTATCTTTTTTTTCTCAGCAGGTTAGAGAAACTTGCTAACT # Right flank : GCACCACAATGGGTGCCCATTTGTTGAATGTAAGGGGCTTCACCCCACCAACTCCAACCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGATCAAGGCCAGCGGCTGCTCGCCGCGTTCGTTGGCGCGGAAGGCATCGATTTGCGCCAGCGTCTCGGCACCCTGCGGCGATAGCCGCACGATGTCCACCAGCCCCTGCATGCTCGGCAGCTCGTTGCCGAGGTTGTAGCAGTAGCCGCTCATGGTCTGGATGCCGTTGAGCACGAACACCTGCTGCTGTTCCTGTGAGCGCATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCATTCGTCCTTGCCGCGGTTCTCCGAGCGGGCGGTGAAGCAGCGCGCCGAGTAGGCCAGCGGCAGGTGCCCGTAGCTCAGCACCTCCACCTCGAAATCGTGGCGGAAGCCCAGCTCGTCGCACTGCGTCAGCAGGTTGGCCAGCCAGTCTCGCGACAGCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17-287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOM01000030.1 Serratia marcescens strain 907_SMAR 93_13047_298240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 ............................ TCGGCGTGCCGGGTCTCGATTCCCTTGAGGTT 77 28 100.0 32 ............................ ATCTGCTGGTATCGCGGGTCGTTTGGCCCTGG 137 28 100.0 32 ............................ TGAATTTCGGTGGTATCGGTCATGATTTAATC 197 28 100.0 32 ............................ AATACAACCTGGCGGGCAACTATCACACGGAT 257 28 96.4 0 ....................A....... | A,A,G [277,280,283] ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGTCAGCGTGGTAAG # Right flank : AAAGTAATATGTGTTTGGTACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCTTGGAAAAACGTGGTAGAACGTTGGTGTCGTCGGCATTGATCTGTATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCTTCTGAATTAAAAACAATATTGCACTCGAAACGAGCAAATTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGTCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCAGCGAACGAAGTGGAAGTCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 8763-10289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUOM01000030.1 Serratia marcescens strain 907_SMAR 93_13047_298240, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8763 28 100.0 32 ............................ TCTACCACTACCTGCGGTATCTGGTACCGGAT 8823 28 100.0 32 ............................ TTCACCACCGGCACCGCCGGCGCGGGCGTCGC 8883 28 100.0 32 ............................ AGATACATGTTGCGCATCACCACCGTGACCAG 8943 28 100.0 32 ............................ TCATCAGAACGGCGTGTCGTCATCAAAATCCA 9003 28 100.0 32 ............................ TACAGCTTTCCAGTCATCCTCGATGGATTTCT 9063 28 100.0 32 ............................ AAATGCAATTAGTGGGAACATGAATTATCCGC 9123 28 100.0 32 ............................ TGGATATTTCTGTCTTAGTCGAAAGCCGGCAT 9183 28 100.0 32 ............................ TGATACACGCCACAGTCATCCAGCACGACAAT 9243 28 100.0 32 ............................ ACATATCCTGTTCTTCATGGCTGCACAGCTTT 9303 28 100.0 32 ............................ GAAACGATACGCCACCAGATAGGTGAGACGCC 9363 28 100.0 32 ............................ GTGTGTAGTCTTTGGCGGCCAGACCGAACTTC 9423 28 100.0 32 ............................ TGGAGTTTGATGCCGGCGCGTTGGATATCGCC 9483 28 100.0 32 ............................ GTCCTTGCAACCTCTCCCATTACCTCACTATC 9543 28 100.0 32 ............................ AAACCGGTGACAAAACATTCGTTGCGGATGAT 9603 28 100.0 32 ............................ ATTTATCAAAACATCGCCCAGCTTATAGAGAT 9663 28 100.0 32 ............................ CATATCCAGAAACGGGCGAGGTGGCAGCGTGA 9723 28 100.0 32 ............................ TCAAGACCAACGCCTGCTAGTTGTGCGGCAAA 9783 28 100.0 32 ............................ CGAAATTCCTGCCTGCGTTCGATGAACGGCTC 9843 28 100.0 32 ............................ AGTGAAGACCCGGCAAATATCGTGCATTCAGT 9903 28 100.0 32 ............................ ACATTCAGCCCGAAGTGCCGATCGCATCTATC 9963 28 100.0 32 ............................ ATACGAGCACGCTCAATCCTGGCGTCGTTCAA 10023 28 100.0 32 ............................ TTCGACCTTCTCGATGCATTGCGTTTCCTGAT 10083 28 100.0 32 ............................ AGCCAGGCCAAAGTCGGTGCCGCTGCCGGCGT 10143 28 100.0 32 ............................ TGAACGAACCCCGCGCCATACGCCGTGTACGG 10203 28 100.0 32 ............................ TTCGGTGGCCGGCCGCGAGCGTCTAGCCATCA 10263 27 75.0 0 ........TT...C.AC...-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGTGGGATTCGACTGGATTAAAGGGCTACGGGACTATACCGAGCTATCGCTCATCCAGGCCGTGCCAGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGTATTTTCCTATTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGTTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCCGGAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTTCTCAGCTGTTTGACGCGGTATTCCAGCTTCAACGCCGTTGAGCGATCTCCCACCTGGCAGTGAAACGCCAGCGTTAATTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAGACGCAGCATGTAGAGGTACCAGAGAGTGGGGGAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCTTACCGCTTTACCCCTGTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //