Array 1 114490-116170 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZYW01000047.1 Streptococcus sp. SR4 contig00017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 114490 36 100.0 30 .................................... AGCCATGTCTTCATCCTCAACCTTACCACC 114556 36 100.0 30 .................................... CATGACCATCGATAGTGCCGAGGGTGCCCT 114622 36 100.0 30 .................................... AATCGAATACAAGAGAATCGATACAGTTCT 114688 36 100.0 30 .................................... TAAAATGTGACAAGTAATATCATAATCAGC 114754 36 100.0 30 .................................... CACAGCCAGAAGATGAAGTGTATGGCTACT 114820 36 100.0 30 .................................... ATCTGAGAGGTATTTCTGATTGGTATGATC 114886 36 100.0 30 .................................... TATTGACGGCTCCATCTGTTGTCCACGTCG 114952 36 100.0 29 .................................... TTTTTTTATTCCTTCCCTCTTTTCCCCTC 115017 36 100.0 30 .................................... TCTATAAATGGTTTGATGATGTAAAAAATG 115083 36 100.0 30 .................................... CTGATGTCTTCCCTTCGTCTTGACTTGGCG 115149 36 100.0 30 .................................... AAAAGCCCTTTGCATTGTTTCAATAACCTT 115215 36 100.0 30 .................................... CATAGTAACGTCTTACTGGAGTGTCTGCGT 115281 36 100.0 30 .................................... TACAATGGCATTCATCTCAGCATGCACCGC 115347 36 100.0 30 .................................... AGACTAAGCGACTTGTCAAAGGTGCTAAAT 115413 36 100.0 29 .................................... TTTCTCTTTAGTACCGTCACCGTCGAAGT 115478 36 100.0 29 .................................... AAGCTCATGCAGGGCATTGGCTCGGTGTT 115543 36 100.0 30 .................................... CTCTAGGTTTGACAACAGAACAATTCTTGA 115609 36 100.0 29 .................................... TTCATGGACAGCTACAAGGATGTCAATTT 115674 36 100.0 30 .................................... CGGTTTTACAAGTAATCGTGCAAGGTATCC 115740 36 100.0 30 .................................... ACTGGTCTATTCGTTTTAAAAACCGTGCAT 115806 36 100.0 30 .................................... ACAAGGGCAATCCTAAAGTCGAATGGATGA 115872 36 100.0 29 .................................... GAGGTGATAATAATTGCCGATATTTAATT 115937 36 100.0 30 .................................... CCACTAATGCGGACGGCAGAAAGAACGGTG 116003 36 100.0 30 .................................... CTGAGTTGTTACCGATAGAACCGACGCCCT 116069 36 100.0 30 .................................... CGCAGTTAGTTGAGAATGACACGACATTCC 116135 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGTTTTGTCTCAGAGGAATCTTATGATAGTTTTTATAAGAAAATTGGTCAGCTAGCCCAAAAGTATCCAAACCTAAACTTTATTTTGTTTCCTAGTGACCAAGGATATCTAAAGATTGACGAGGAAAGTAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTACGATGTTGAGTTTATGTATGAAAGGGTAAAGAAACATTATCCAAGTAATAATTTTCCGACGCGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTCGTTGATTCAGTAATTTTGAATATCTTAAATCAGTTGTTTCACTTTAACTATTGTATAAGATATTCTCAGACACCTGATGAGGAGCTATTACATAGATATTTAAAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGTCCGACCTCTTTGACCTCAGTCAAATTAAGGATAGGCAGGCTCTGTTTGAGATTTTGATAATAATCCACAGTGATGGTACCAGTGACTTTCACCCAAGTATTGTCCTTGAAGGTTTGGTCACTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAGACAAAACCGGTATAGGTGACCTTCTTGCCCACAAAATCGTTAGGATAGAGGTAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCGAGCTCTCTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAGTACTGAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 65688-63481 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZYW01000048.1 Streptococcus sp. SR4 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 65687 36 97.2 35 .............A...................... AAACCCTTCTTTGACTGCCTTGTTGATAATTGTTT 65616 36 97.2 33 .............A...................... ATTTTATTAGTTATTGATATTCTTTTATATTCT 65547 36 100.0 37 .................................... TTTGCCCAGGTCCTCAATATGAGACAATTGTGCTTTC 65474 36 97.2 38 .............C...................... AGAGCATCTTTAGTGAGTGTAATGAGTTGCTTGTTAGC 65400 36 88.9 38 ............CA...........A......T... TAAAACTTGTCGCCATCGATACGTTTGTTAATGACCTT 65326 36 88.9 36 .........A...A.......CA............. TTCATTATTATTGCACTAATAATCCACATACCTTGA 65254 36 97.2 36 .......G............................ AGATTCTTTCTTTAAATCAGAAATGAAATCATCTAC 65182 35 94.4 38 .....................C.....-........ GGAGTCGAGATCACAACATCACTTGGCTTAGTGTGATC 65109 36 91.7 36 ........A....C.......C.............. GTTAGCAAATTTCATTTTGCTACCTCCTGAAAAACA 65037 36 94.4 36 .....................C..........T... AAACGACCAGACAAAACGACATTATTCATAAGATTT 64965 36 91.7 36 .G............C.................T... TCGTTGTACACCTCATCTCCAACTGGCTGTCGTTGT 64893 36 94.4 38 ..............C.................T... TCATATCTACTCCTGAGTGTTCAATTTCTTCTTCGTCT 64819 36 100.0 38 .................................... CGTCCAAATCGATTATCAATCTTCATCATTTTAGGTTG 64745 36 91.7 35 ....................A....A......T... AATGATGACGCTACTAACCATCCAATCAATACCAT 64674 36 86.1 38 .T.....G.....C..T....G.............. CAAGTATCAGAAAGGACAGCGTTGTTCAAAACTTGACG 64600 36 91.7 37 .......G......C......C.............. CTATTTGAATCTGTTTCTAGTTTTCCATTCAATGAAG 64527 36 94.4 39 .............A.......C.............. AGTTTTATAGGCATAGATATATGATCGTCTGTTTTGACC 64452 36 86.1 38 A............A.G.....C...A.......... ACATATAAGATAATAGCTCTTAATAATTGCCTTTGTTT 64378 36 94.4 36 .............CC..................... TAAAATACTGACACGCCTTGTTCTTCCCAACTAGAA 64306 36 94.4 35 ..............C......C.............. ACCTCAAATTCAGCATTACGTTTCATAATTTTCCT 64235 36 94.4 37 .............CC..................... AATCTTCTGAAAGTACCTTTGTTATACTTATAAGTTT 64162 36 91.7 36 .............A...T..............T... GCGACAACATAGCTACTCATGGCAGTTTCCTCTTTT 64090 36 94.4 34 .............A........A............. GCGATTGCTGAAAGTGTTGTAATTTTAGATGTTT 64020 36 94.4 36 ...........G...................T.... GATCAAATGATGCTGTCAAAATATCTGACTGAGTGA 63948 36 91.7 34 .............C..........A.......T... TGTTGTATTCATCACGATAATCATTGAAACCATC 63878 36 94.4 38 .............G.......C.............. CACTAATAAACGCTTCTTGTCGTTTGAGCTCTTCGGCT 63804 36 88.9 39 .............CC......C.............T TCATAGCTTCATAAACCGTCCACCAGAATTTATCAGTTT 63729 36 100.0 37 .................................... TCAGTATTAGTGAAAGATATACTTCATTCAGTTACGC 63656 35 91.7 35 ...........................-....T..T ACTCTTTTATTTTTTACGGTATACATAATTTTCCT 63586 35 80.6 35 ....C...G....C-......CA.........T... CATACGGAGCTACCTGACGACCCTCAGCATAATCT 63516 36 80.6 0 .............A................TTTTTT | ========== ====== ====== ====== ==================================== ======================================= ================== 31 36 92.7 36 GATATAAACCTATTTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTTTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAATCTCAGTGAAGAAGAACGTGACTTTGCGAGACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCCAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGACTATCAGTCTCTCCTTAAGGATATCGAGAGTTTCTACAAGGCTGATGAAGAAGACAGTATAATCGTATATGTGACAACCAAAGAAGAGGTGACCAGTTTTAGTCCCTACAATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGGCCTGCAATCATATGGTACAATAGAGATAGTGTTTCCAGTGGGTCCTACATCTTGTGTCGCTAGCAGCTGTCTAGTGCACAAGATATGGG # Right flank : GAAAATTTTGAAAATAGTCTTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGGTGAAAAGTACTTTCAGCTTTTGGGGTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTAAAATTTCATGGCTTCTTGATGGAGCAATTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTCGTACATCTGCTCACAGATGACCTCGAGGATAAAGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGACCTGCCTAAGCTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGAGCAGATAAACTCTTAGAGATTTTCAATAGTGAGGACAATCAAACCTATTTTTCAATCATTTTTGAGA # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTATTTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //