Array 1 51144-52148 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUA01000011.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3295 NODE_11_length_178178_cov_0.236884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51144 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 51205 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 51266 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 51327 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 51388 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 51449 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 51510 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 51572 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 51633 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 51694 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 51755 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 51816 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 51877 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 51938 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 51999 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 52060 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 52121 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 68713-70084 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUA01000011.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3295 NODE_11_length_178178_cov_0.236884, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68713 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 68774 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 68835 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 68896 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 68957 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 69018 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 69079 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 69140 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 69201 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 69262 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 69323 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 69384 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 69445 29 96.6 32 A............................ TTAATCCCCACGGCCAGGAGGTATTGATCAAC 69506 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 69567 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 69628 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 69689 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 69750 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 69811 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 69872 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 69933 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 69994 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 70055 29 100.0 0 ............................. | A [70082] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //