Array 1 90111-91239 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGGE01000004.1 Limosilactobacillus fermentum strain 103 NODE_4_length_91540_cov_104.336068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 90111 29 100.0 32 ............................. CACCATTCGGAGATATACCTCACTAGGAGTAG 90172 29 96.6 32 ............................C TCTGGGTACTACAACAGTCTTAGTGGGGAAGT 90233 29 96.6 32 ............................C TCTGGGTACTACAACAGTCTTAGTGGGGAAGT 90294 29 96.6 32 ............................C ATTGGGATCAGATACAAGGCGATCTTCAATCT 90355 29 96.6 32 ............................G ACGCAACGGCTTGGGTTGAACCTACTCAAGAA 90416 29 96.6 32 ............................C ACGCTCAAAGAGTTTTAGATACCATGCTAATG 90477 29 100.0 32 ............................. AGTGTTGGTCAAGCTATTCATGAAAAGTTAGT 90538 29 96.6 32 ............................C TACCATCCAAGAGATTACCGTGACACGATACT 90599 29 100.0 32 ............................. AATCTTCGCTTGTGCTGAGCATCGTTCGATTG 90660 29 100.0 32 ............................. TAAATGTGGTGGGTCAAATACAACTAAATCAA 90721 29 100.0 32 ............................. TACGTACACCGCAACGCCTGGCGGCACCGGAA 90782 29 96.6 33 ............................C AACCAATCAACTGGTGAATATATCAACGCGTCA 90844 29 100.0 32 ............................. GAATCAAAGGTTAAGAGGACAATTCGTTAAAG 90905 29 96.6 32 ............................C ACGATTGATGCGCCAGAGTGGGACAAATTCTT 90966 29 96.6 32 ............................C AATTAGGCGAAAAGATTGTGTGTGTGGATAAG 91027 29 100.0 33 ............................. CTAAGGCCACGATAGAACCATAAGGCGCCTGGA 91089 29 100.0 32 ............................. CCGGGATTAATGACGACAACCGAAATCGCTAA 91150 29 100.0 32 ............................. GAGGCAGTTTCACAACTACGAAGTGCGTCACC 91211 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 98.4 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGTAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TTAAACGGTTATGTCCGTATAATTGGTGTAAATTCTAAATAGGACTTTGTGAAATCTGAAAGGAACTTCATTATGCCAAAGGTTGAATTAAATTTAGAAGATGACGAATTAAAGGAACTATTACTAGGTGATCGGGATAAGGCCATGCAATCAATTATGGCCAAGATCCTTGACGAAATTCTTAAGTCCGAAGCGACTGAGCAGATTAAAGCTAAGGCTTATGAACGTTCGGATGAACGAACCAATTCACGGAATGGTTATCGGGTTCGTCAGCTTACCACCCGCGTAGGGTCTCTAGAAC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //