Array 1 619362-616950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGU01000001.1 Pediococcus acidilactici AGR20 N775DRAFT_scf7180000000006_quiver.1_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 619361 36 100.0 30 .................................... AGCTTCTTTCCGTTTTTCTCGCCTAATAGA 619295 36 100.0 30 .................................... GAGTTATTACCGTTTGAAGTAAAGTATTGC 619229 36 100.0 30 .................................... CCACATAGTTACGTGTATCAGTCCATCGTT 619163 36 100.0 30 .................................... TAAATTTTAGTGCTAACCCAGAGGGCGATC 619097 36 100.0 30 .................................... TTGGTCGCCTTGACCATTTAAATAATTTTC 619031 36 100.0 30 .................................... TTGGGATCATGTAAATTGTTGTGATAATCC 618965 36 100.0 30 .................................... GATGACGATACGGGTTGGATGGACATTTCA 618899 36 100.0 30 .................................... AGACGTTTTGCCGCTGGATTGATTGGGCTA 618833 36 100.0 30 .................................... TCGGAATCTAAAAGGAGTGACCATATATGA 618767 36 100.0 30 .................................... ACAACATCTAAGATAAATGACGATATCTTA 618701 36 100.0 30 .................................... AGTCATAAATTGATTCCAAGCTTGCTCGCG 618635 36 100.0 30 .................................... AGCAAGAGGAACTTAACTTATTTCAGGGTA 618569 36 100.0 30 .................................... CAACTATTGATTGCCCAATCTACCCATTTA 618503 36 100.0 30 .................................... ACTTAGAAACAGAAGATTTAGACTCTGCCA 618437 36 100.0 30 .................................... CATGACAGGGGATATATGAACCAAATCTCA 618371 36 100.0 30 .................................... CGTTTGGCTTCACGATTGCTGATGACGACT 618305 36 100.0 30 .................................... GGATTGTTCTGGCACTGTTGTTCAGTGTAA 618239 36 100.0 30 .................................... TATTTCTTTGCTCCAGTATTGTCGTTACCA 618173 36 100.0 30 .................................... AAACTAAGCGGCTTCGGCCATGCTGTTGAC 618107 36 100.0 30 .................................... ATGGCGACGTGGGGAATATTACTTGCACTA 618041 36 100.0 30 .................................... GAACCGGGTCGCAAAGCTGTTAGAAAATAC 617975 36 100.0 30 .................................... CTTTCAACCGTATGGAAAAAGCAATTAAGG 617909 36 100.0 30 .................................... TCAGAAAAGTGTGTCAAAAGCCGAACACAA 617843 36 100.0 30 .................................... TTTGTTTTTGGTAATTCTTACTATCACGTA 617777 36 100.0 30 .................................... TTAAAGTACCTTATATATGCTTCCGCTGGA 617711 36 100.0 30 .................................... TTAATTATGACTATGAATCCCCAACGTTTC 617645 36 100.0 30 .................................... CAAAAGCATTCTTAATAGACACATATTGAT 617579 36 100.0 30 .................................... AAGGATAGTAATAAGATGAGTCCTCAGGTT 617513 36 100.0 30 .................................... CACGTAACCTATGCCTTACATCAAAAGGGT 617447 36 100.0 30 .................................... GGTGAATAGTAATGAAGTTAGCAAAGATTA 617381 36 100.0 30 .................................... ATGGCGACGTGGGGAATATTACTTGCACTA 617315 36 100.0 30 .................................... TAAAAATGTGAAAGTAGAAATAGGTAATAA 617249 36 100.0 30 .................................... GAAGCCTAAAGAGATTGTGCAGTCACTTTC 617183 36 100.0 30 .................................... CGTATCCAGACAAGAATGTATACGAATCAG 617117 36 100.0 30 .................................... AAGATTATGAAAAGTGGTTTAAAACTGCCA 617051 36 100.0 30 .................................... ACTTTAGTGCCCATAATTTCACTTTTGTTT 616985 36 97.2 0 ...............................G.... | ========== ====== ====== ====== ==================================== ============================== ================== 37 36 99.9 30 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Left flank : CCAAGATTTAGTTATTCAAAAATATTTAACTAAGATTGAACGAGTTTTTGCTGAAGGGCTGGTGGAAGAGCAGCGTAACCAAATTCACGATCAAGTTAACCAGCTATTTAATACGGTTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTCAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCCGCTAAGCGTGGATAACCCGTATGGTATAATTGAAGCGATTTTGAAGATTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTAATGTTGCACATTATTTAACGGCAACCCAAATTGAAGAACTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATTGAATTCACAGAAATAGGCAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGATAATGACTTTGTTGATTGGCATCGATAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : ATAATGGCGAAGAGAACTGTATAGTGATACGAAGATAAAATCGAAAAGTTGAAGATGCAGAAGGATGTCGGATTAAAGGGCTTAAGTACGAGTACCATCGAGAAAGTATATCAAAGGTGTGCAATGATGGAATTGTTAAATTAGTAAAAACAATGTACATTAATAGCTCTAGAAAGAATAGCGAAACGCTTCTATAGAAAAGCAAGCTATTATAATTTTCAAACTTGAAACTGGAAAAATCATAATAGTGTTCAAAATTAACAAGTATGTAAGGAACGATAATGAAAGTTAAAGACGTTTATTCTGAAGCTGAATTAGAAGCTTTATTAAAGTTCATTCCAGATATTGATATTGGCAGTGAGTATACTGATGATGATTGGTGTATATTAGACGACAAGCTACATGACATTCTAGTTTTAAAGGGCCGTACATCTAACGACGAACTGAACGACATTGGGTTAGTTAGTTGAAAAATTAATAGATTTCATTCCCTAATTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //