Array 1 21892-20843 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFJ01000008.1 Salinivibrio sp. MA607 scaffold8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21891 28 100.0 32 ............................ TGACCCAAAATATTGCCACGCGGGGTTAGACG 21831 28 100.0 32 ............................ CTTTAGACGTAAAATCACCACGAGGCTTTCTA 21771 28 100.0 32 ............................ GTGACGGGTTGCAACAAATGGCAACCGGTGCG 21711 28 100.0 32 ............................ TGTAACCACCGCGATTATCAAGCTAGGCAAGC 21651 28 100.0 32 ............................ TACGAGATAGGCGACTACTACGGCGGCAGTCT 21591 28 100.0 32 ............................ ACTCCATCAAGCGCGTTAACCGCAGCTAGTAC 21531 28 100.0 32 ............................ AGCTTAGAGTCTCGCTCTTTGCGCAGAACACC 21471 28 100.0 32 ............................ TGGCGCGGTTTGTGACCGTGACCAGTGTAAAT 21411 28 100.0 33 ............................ CAACGAGGGACGGCCATTTGGTGATCGCGAAGT 21350 28 100.0 32 ............................ TAGCACGTTTTTTGCATTCATCATAATCAGGA 21290 28 100.0 32 ............................ AAATCCACGGCATAGCCTGATTCGACGATCGC 21230 28 100.0 32 ............................ TGATAACCCAAAGCCACAAGGTGACGGAGAAA 21170 28 100.0 32 ............................ TGCTCCGTGTGTGACTTACGGTCTCGGTCATC 21110 28 100.0 32 ............................ AAGTGAACAAATCGACCGCTTGCGCCTGACTG 21050 28 100.0 32 ............................ GATAGAGACTTCTCACACGTGGGCGCGGGTTA 20990 28 100.0 32 ............................ AAGGAGCCAGCAATGGACAAAGACGAACTACG 20930 28 100.0 32 ............................ GCCGAGGGGATGCGCAGATAACGTCGACAACC 20870 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCGCTAAACCTATCACTTTTTAGCGGATTTTATTTTGTATTGCGTTTTGCAATGGCTACGTAAGACGTGCTCTGACCGTAGGGCCTGATGCTTGGTTTTACGCCCGCGCGTCCGCTCACGCCATACCTTAAAGCTGCGTGGTTTTAACTCGCGCCGCATCAAAGCGATGACGTCATCCTGACGCAAGCCATACAGCGTCTCAATCGCCTCAAAGGGGGTTCTATCTTCCCACGCCATTTCAATGATCCGGTCAATGTCTCCCGGTTGCTCGTTCAATGCCATATCGGTCTCCTTGCTCTAGTGGCAAACAGTACGCGTCGAGCATGAAAGACCGATCAGCGTGAGTCCTCAGACTGAGCAATGCTTTTATCCTTGTTTTTGGGATATTTAGAAATAAATAGCGAATACAGTCAGTTACGACTGGGCGTTTTTAATAAGGGTAAAAAACGATTTTTATCCTAACGGCCTGTTGTCACAGGCTATTATTTCGTTATTCTATA # Right flank : AGATTAACGACCTGGCCGTCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCGCGGTGCAAATCACACCAAGCTTGTACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACATCGGTGGTGCCATTGGCGTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATATGAGCACATTGCCAACGGGCGCCTGTCACGATCGATGTTAATCGTTGGCTCCGATGTCGGATGGCGCCAGTTGCACTGCGCGCGGCGTAAGTGATACCAAGTTTGTTCGATCGAGTTAGCGCTTATGCCGACCTACGCATAGGCAGCTTAGACACTGAAAATAATTGTTTTTTTGATGTCAGTTCATTGTTAGTGGGTCGTGGCATCGAGGGAGTAGGGGATGGTTCAAGGTCAATAAAAGCGTATGACTAGCAATGACCATACACGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9535-4987 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFJ01000026.1 Salinivibrio sp. MA607 scaffold26.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9534 29 100.0 32 ............................. TTATTGGCGGCGTCACTGTCTCACTCACTGGC 9473 29 100.0 32 ............................. ATAAAAGGATTGAAAGAAAATTCCCTGAGTTC 9412 29 100.0 32 ............................. TATTAATTATGGATCTTTTTACCACCCTTGGT 9351 29 100.0 32 ............................. AAAACTGGGATCGCGGCAACAGTTCGAGCGGT 9290 29 100.0 32 ............................. CCTTATTGCTGATCGCAATATGTTTATCACGC 9229 29 100.0 32 ............................. ATTGATGATGATGCAATGGAATCACTTGTGAA 9168 29 100.0 32 ............................. ATTGTTTTTTGTTAAACCTTGCGCCTCGTGAT 9107 29 100.0 32 ............................. GTTACATTGCGTGTGCTCATTTTGAGGATACG 9046 29 100.0 32 ............................. ACATTGGTCGAGCCAAAACAAACGTCTAGTTA 8985 29 100.0 32 ............................. CGACACGAACGTTTTTCTGGTCGAGCAAGTAT 8924 29 100.0 32 ............................. TCAATGGCGCGTGAAGAAAAGACCGGCACAGT 8863 29 100.0 32 ............................. TTAACTGGTCGGACATGCTCGGGAACCTCCCC 8802 29 100.0 32 ............................. ACAGCTCGAACTCGTCTAGTATCCCTGATTCA 8741 29 100.0 32 ............................. TCTAAAGACAGCGCCAGCGCTGGATGCGAGAT 8680 29 100.0 32 ............................. TGCTCAACGGGCGGAATGCTGCCCGCGTACAG 8619 29 100.0 32 ............................. CCGTTTTGCCGCGCTTGCTTGGCAGCATGGGC 8558 29 100.0 32 ............................. CTCAGTGTTGACCGGCACCTCGTTTTCGACAG 8497 29 100.0 32 ............................. CAACGCATCATCACTTTGACGACCATCGAGGT 8436 29 100.0 32 ............................. CTGCGTGCAAGAGTCGATAACCAGTGTTTTAT 8375 29 100.0 32 ............................. TTGGCGCGCAAAAATCGAGAGGGCATATGTTA 8314 29 100.0 32 ............................. CAGGACGAAGAAACCGACCTGTTTCAACTTTA 8253 29 100.0 32 ............................. CATGCGTAGATAAACCGCGTCAGGCTTTACGG 8192 29 100.0 32 ............................. TAATTAACCGTAATAGTTGACAACAGGCTATC 8131 29 100.0 32 ............................. TTACCGGTATGCAGGACGCAGCCTTTGCCAAC 8070 29 100.0 32 ............................. TTTAGCGGCCTCTATCGCCTTGATTTCTCCGA 8009 29 100.0 32 ............................. CTACTCATAAACTCCCAGACGGGCGTTTGGCA 7948 29 100.0 32 ............................. ACTGCGCCCAGGCAAACATTGGCAAACTCGAA 7887 29 100.0 32 ............................. TTAATAAAGAGACCTTTGGAGGTGAGCATGAG 7826 29 100.0 32 ............................. TTGTAGTTCGTCGAGTTCGATATACATTTGCT 7765 29 100.0 32 ............................. CGATCGGAATACCGGCTCGTTTTTACGCTCGA 7704 29 100.0 33 ............................. CCTTGCAGCCTTGCCCACTCTCGAACGGAATAA 7642 29 100.0 32 ............................. TTTTCGCCGATCTTGTGTTCTGTTCCGTCATT 7581 29 100.0 32 ............................. TGTTTCAATAATTGATTGGTTAGACAGTATTT 7520 29 100.0 32 ............................. TATGCTGAGATCCACACCGGTGCCAACTATTA 7459 29 100.0 32 ............................. CGCACTTGCGCTTAGTCACGGGGCCAACGTAT 7398 29 100.0 33 ............................. AGTACGAAGGGGACGACGGCAAGATCTACCCGA 7336 29 100.0 32 ............................. TCGGCAAAAAATAACCGGCCGCTGATGGACTT 7275 29 100.0 32 ............................. CATAATGTGATACTTGATCACCTTACTCTCCG 7214 29 100.0 32 ............................. AGCATCGAGAACTTGAGTCTAAGTTGGATGCC 7153 29 100.0 33 ............................. CTAATCAATCATGTTTACAAGCGACACGGAGAG 7091 29 100.0 32 ............................. GCAATCCGGTAATGCAAACTGTTTGGGAAATG 7030 29 100.0 32 ............................. CCCATTTGCTGAATAGCATCGGTGAAGTTAGT 6969 29 100.0 32 ............................. GTTTAGCGCTGGAACAAAGGCGATAACCGCAG 6908 29 100.0 32 ............................. CCGAGCAATGTCACCGTCTTGTGCTAGCGCCT 6847 29 100.0 32 ............................. CGTAAGCTAGTCGCCCACGGCGTAGGCGCAGT 6786 29 100.0 32 ............................. TGCTAGATTTGTTAGCACATTAACAAGAGGAA 6725 29 100.0 32 ............................. TCGGCGTTCTGGTCGTGGAGGATAGCGGGGGC 6664 29 100.0 32 ............................. ATATCGGCGATGCGATGGCATACAGCATCGAG 6603 29 100.0 33 ............................. TCAGCAAATAATTGGTTCTCATCTGTTGTTTGA 6541 29 100.0 33 ............................. AGTACCGCGACCAACAAAGAGCTGGGAATCTGC 6479 29 100.0 32 ............................. CCGCCGGCGTCTTCGAGCGTCAGCGCTAGATC 6418 29 100.0 32 ............................. CGTGTTCATTGATTCGATGATATACGCCTTTA 6357 29 100.0 32 ............................. CGCAAGCAAGAGCTTAAACCAATCTCGTACTG 6296 29 100.0 32 ............................. TGCAGTTAGTTTGAATGGCTGCGCTTGATACA 6235 29 100.0 32 ............................. CAGATGGCCGAGCTGGAGGAGCAGTCCGAAGA 6174 29 100.0 32 ............................. CTCACATAAACAGACTTTTTGCCATTATCAAT 6113 29 100.0 32 ............................. TAACTTGTTGACGGCATCGTTAACCGCCGCGT 6052 29 100.0 32 ............................. TTTGAGCGACTGGATTAACGTTAACAGGGGTA 5991 29 100.0 32 ............................. TAACTCACTTTGGTGCCAACCTTTTTGGCTAG 5930 29 100.0 32 ............................. TTTCCAGCTCGTGAACGCATTCAAGCCGCAAT 5869 29 100.0 32 ............................. TCATGCGGGTCAACACTGACGTGCTCGGTGAT 5808 29 100.0 32 ............................. TACGATATGCGCCCGTCATTATTGCTGTTGTT 5747 29 100.0 32 ............................. GTTCTGATGGATGTTTACAGGCAAAGACTAAG 5686 29 100.0 32 ............................. GTTATGTCGTTYTACACTGCGGGTTCGGTGAT 5625 29 100.0 32 ............................. CATACAAAGACGCACGAGAAGCGGAGCGTCAG 5564 29 100.0 32 ............................. AAAATCCTCCTGTCAATCGCACTCTTGCGGTT 5503 29 100.0 32 ............................. CTTTGATGGATAGCTTTGCGGTTGATGGAACA 5442 29 100.0 32 ............................. GTGCCGTCTGCTGCTGCGTAGACTTTATAGTC 5381 29 93.1 32 ..............T............T. GTTCTCTTTACGTCCTGTTTCCGTCTCCTTGG 5320 29 96.6 32 ..............T.............. AAATGCCCGCAGTTTATGACCGAATTCGTATC 5259 29 96.6 32 ..............T.............. TTGAGCGTCCTGACACTGAGATTCTGTCACTG 5198 29 96.6 32 ..............T.............. CCGTGGGACAGCCGCCCCGAGCTCTTCGGACT 5137 29 100.0 32 ............................. GGCGAACAAGGTGTAGCAAACGCCTAGCACGT 5076 29 100.0 32 ............................. TCGCCAGAGGTAAACGCCCGCGAGACCAAATC 5015 29 72.4 0 ..............T.A...A.AT..GGT | ========== ====== ====== ====== ============================= ================================= ================== 75 29 99.4 32 GTGTTCCCCGTGCCCACGGGGATGAACCG # Left flank : CGATGATCGAAGAGGTATTAGCGGCCGGTGATATTACACCACCTGAACCGCCTCATGACGCTCAACCACCAGCTATACCTGAGCCAAAATCAATTGGTGATAGTGGCCATAGGAGCGGGTAGATAATGAGTATGCTTGTTGTTGTCACCGAAGCCGTACCACCGAGATTACGTGGCCGACTTGCGGTCTGGCTGCTCGAAGTGCGCGCCGGTGTCTATGTGGGCGATGTAACACGTCGCGTGCGGGAAATGATTTGGGAGCAGGTAACAGAACTTGCTGACTCCGGCAACGTGGTGATGTGTTGGGCGATGAACAATGAATCAGGTTTTGACTTTCAAACTTATGGTGAAAATCGTCGGGAGCCTGTCGATTTAGATGGTCTAAGGTTGGTGGTATTCAAGCCGAGTGATGAGGATAAATAAGCCCAGTGTGTTCTTTAAAAAATTGGTAGAAAAAAGAGGGTCGATTTTTGTTATATAAAACAGTAGTATCCGTTTAGA # Right flank : TCGTGAAATGCCGAATACGTTAAGGCTGAGACTATCTTATCTCAGCCTACTGATGTTGCCGAGCGCTAATAAGCTAAGCTTCACTCAACTGCTCGACGGCTTCCAGAGCTTGAGAGCCGTAAATCAACGACGGACCACCGCCCATCACAATGGCAACATTAATTGCTTCTACGCATTCTTGCTTAGTCGCGCCGTGCTTTAAAGCGGCGGCGACGTGTGCGCCGATACAGCCATCACAGCGCGCGGCAATTCCGATGCCTAAGGCAATCAATTCTTTGGTTTTTACATCTAGATCGCCTTCTGCCATTGCGGCGCGATGAAGCTGGCCAAATGCAGTCAGTGTCTCGCTGCTGTGTGCCTTAAATTGCTTGTTGAGAGCTAACTGTTGTTGGTTAATCTCTTGGTAGTCTTTTTTACTCATTCCCAATCGCTCCTTGTTGTTTAGATTATGCTAATTTATAATTTTTGCATGTAAGATGCAACTAATGTCTGGCACAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCCCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //