Array 1 335-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHNF010000031.1 Aerococcus urinae isolate Au-02-B96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 334 29 96.6 32 ............................T CATCACCCCTTAGCTGATCTCACAAGAGCGAT 273 29 100.0 32 ............................. GAACATATCAGTCTAATTCAAGTAGACGACGC 212 29 93.1 32 ..A........G................. AAAAAAAGAAGTATGAGAAAAAAAAGAGGTTG 151 29 100.0 32 ............................. AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 90 29 96.6 32 ............................T CATCACCCCTTAGCTGATCTCACAAGAGCGAT 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 CTTTTTCCCGCACATGCGGGGGTGATCCC # Left flank : | # Right flank : C # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 185437-184617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHNF010000002.1 Aerococcus urinae isolate Au-02-B96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185436 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 185375 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 185314 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 185253 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 185192 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 185131 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 185070 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 185009 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 184947 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 184886 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 184825 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 184764 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 184703 28 93.1 32 ......................A-..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 184643 27 86.2 0 ....................--....TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : GTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 206551-204387 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHNF010000002.1 Aerococcus urinae isolate Au-02-B96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 206550 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 206489 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 206427 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 206366 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 206305 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 206244 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 206183 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 206122 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 206061 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 206000 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 205939 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 205878 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 205817 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 205756 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 205695 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 205634 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 205573 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 205512 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 205451 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 205390 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 205329 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 205268 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 205206 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 205145 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 205084 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 205023 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 204962 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 204901 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 204840 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 204779 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 204719 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 204658 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 204597 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 204536 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 204476 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 204415 28 75.9 0 ........-..C......A.T..T...TG | A [204390] ========== ====== ====== ====== ============================= ================================= ================== 36 29 97.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : AAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTGA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //