Array 1 320870-320569 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVJD01000001.1 Roseobacter sp. HKCCD6135 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 320869 36 100.0 30 .................................... CGCGCCTTTTGGCAAGGGCGGCTTCGACGC 320803 36 100.0 31 .................................... CCGATCTCTTCAACCGGATGTCCGGCCAGGA 320736 36 100.0 30 .................................... CCATAACAAGCTGCGCCCCTATCCGGGCGA 320670 36 100.0 30 .................................... ACTCTGGCCAATCTTCTGGCCTCCAGCCGT 320604 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTGCGGCTGGACCTCGAATTCTGAATGGCTAAACT # Left flank : TATCGGGCGCGAGCGCGGCGATCAAATGATCGTTGGGGTTTGGTGGCTCGCCGATGAACGTACCCTTGCCCTGACGTCGCCAAACCAGCCCTTCGACCTCCAACGCATCTAGTGCCCGGCGCACGGCCCGGCGGCTGACATTGAAGCGCCCAGATAGCTCCCGTTCTGTCGGAAGTTTTCCGTCTTTCTCGACCGCGCCACGACGGATCAACTCGCGAATCTTGGCGCGAGCGAGCGACGCGTTGTCTTGCATGATCTGAGCTGTATCGCGCACGGCTTTCTCCAGAACCGGGACCAAAGTGGATTTGGTCCGAACCAATTTTACTTTGGTTCGCGTGCCGCAAAGTTGTCAAGCGATTCCCATCCCGGGGCTAAGCCGGGCCGTAGATCGGCGACGATGGCGGTGGGCCGAAGGGGCGAGAGACGGGATGTCGACTAGCTGTTCGGCATCCGAGTCTGTGCGTCCGGTTGCTGGGCCATGCGAGGGGATGCAGGCAACG # Right flank : CGATCGCCGTGTATCTTCTTGTTTTTACAAGAGGATACACGGTTTGTTGTTACGCAAATCCGCTCAATTATCTTCAAAACATCACCAATTGCTCTGGATTCTTGCGCGCCGCGCGTCGCCCTTGATCTGAGAAATGAATGATATCTCGATACTGACGATCCGTGAAATTGAGGATCTGAATGTCGCCCATCGCAGGGAGGTTCCGTTCGATACGGGTCACCCGGGTCTGAAACGCCTCCTTGCCATTCACAAACCGGGCATAGACCGAAAACTGGCTCCGCTCGAAGCCCCCGTCGAGCAGGAAGTTGCGGAAATCCGTGGCCGCTTTGCGCTGCGGCTTGGTGTCGGTGGGCAGGTCGAACATCACAAGTATCCACATGAGGCGGTATCCTGAAAGAATGGCGGGCTGAAAGGTCATGCACCCAACCCCGCGAGCGTCAGGGTATCGGGCGGTCGCGGCAGGGCGAGAGAGAGCTTGCCGGTCTCGAAGCTTTGCCCAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCTCGAATTCTGAATGGCTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 20602-20967 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVJD01000007.1 Roseobacter sp. HKCCD6135 NODE_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20602 36 100.0 30 .................................... CAGCTCTATCAGTGCATCAGCTTTGGTCAT 20668 36 100.0 30 .................................... CGCAGCCAATACCGGATGGTTCGGGCGCTG 20734 36 100.0 30 .................................... TCGTCGTTGGACCATCCGCAAAAGTAATAG 20800 36 97.2 30 ......C............................. GCGACCGCATCCTGCCCGTAATACTTGTTC 20866 36 97.2 30 ......C............................. TGTCGGCCCCTGTCTTACTAGGCGACAGAC 20932 36 97.2 0 .................C.................. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 AGTTTAGTCATTCAGAATTCGAGGTCCAGCCGCAAC # Left flank : ATGTATACACCCGGAACGGCAATCCGATGATCATCGACGTGCCTGACGAGCCCGGCGCCTATGTGCTGCGCTACTTCCTCGGGCAAGATCGGGTCGTGATCGCCGAACACCCGCTCGTCGTGCAGTAACGCCGATCAAATGCGGGGCGATCTGACGAAGGCCGCCTCGCAAGTCTGACCACAGTCCGCCCGCGCGCCCGCGACCACGGCGCTGTCTCCTTCCTCGCCTTTCAAGACGGCACGGAACTGCGTGGCAAGAGCGGACGATGCTTGAGACCTGATCAGGTTCAACCTTACGGCGCCGTTCTCCGATGTGCCGCCGCCAGATACGTCATTTCGCATCTCCACGGTCTCGTGATATGATCTCCCGGTCAGACCCAAGCCGTCGGGCCGCCCGCAAAAATCTAGAGAAACTGGGGATGTTTTGAGCCAAATGCGCCGGAATACCACACATAAAGACCGGGAATACCCTTGCAAAAACAAGAGCTTCCCCGGTGATCC # Right flank : CGATCCGAAACCACGTCAATCCTAAGCGCAGACGATCAGATATGGATCACCCGGTCATACGCGTCGAGCACGCTTTCATGCATCATCTCGCTCAAGGTCGGATGCGGGAAGACGGCCTCCATCAGGTCTTCCTCCGTGGTCTCTAGTTGACGGCCCACTACATAGCCTTGGATCAGTTCGGTCACCTCCGCACCGATCATATGAGCGCCGAGAAGTTCCCCCGTCTTGGCGTCAAAAACCGTTTTGATCATGCCCTCTTGTTCACCAAGTGCAATTGCTTTGCCGTTGCCAATGAAGGGGAAGCGGCCGACCTTGACGTCATAGCCGAGCTCCTTCGCCTTGGCCTCGGAATAGCCCACGCTGGCCACCTGCGGGTGGCAATAGGTGCAGCCCGCGATGCTTTCGGGTTTCACCGGATGGACCTTGTTTTTGCCCGCGATCAGCTCGGCGACCATCACGCCTTCATGGGAGGCTTTGTGGGCCAACCAAGGGGCACCCGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGTCATTCAGAATTCGAGGTCCAGCCGCAAC # Alternate repeat : AGTTTACTCATTCAGAATTCGAGGTCCAGCCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //