Array 1 1222127-1223192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEK010000001.1 Ralstonia solanacearum strain CCRMRs277 CCRMRs277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1222127 29 100.0 32 ............................. GAAGTATTCGACGGTGCAGCCTCGGTACTCCT 1222188 29 96.6 32 ............................A AGAGGGGCCTCCACCGGGGTCACTACTACGGC 1222249 29 100.0 32 ............................. TTGCTTTGAATGCCCGAGCCGCACAGTTCGCC 1222310 29 100.0 32 ............................. ATGTGTGGATTTTTTTTCGGTCGAGCTTGGCG 1222371 29 100.0 32 ............................. CGTTGCCGTGCTGACACGGTTCTTGTGCGAAC 1222432 29 100.0 32 ............................. GCATCGGGCCAAGGGTGTCCCATCCGCGAACT 1222493 29 100.0 32 ............................. CTCAACGAAATGGCGAATCTCCGCATCTCGTG 1222554 29 100.0 32 ............................. AGCCCAGCATCGCTGGGCTTTTTCCTTTTGGT 1222615 29 100.0 32 ............................. TCACGTGCAGCCTCCATGTGGATTTCTTCGAT 1222676 29 100.0 32 ............................. ATTTTGAGTGCTGCCTCCACCGAGGCACCTCA 1222737 29 100.0 32 ............................. CGTGGACTTGAATCCCAACTGGCGCAAATGAA 1222798 29 100.0 32 ............................. AACGTGACGTGGCCGCGCGAGTGCGAAAAGTT 1222859 29 100.0 32 ............................. CCGTAGTAGTGATCCCGCCCTCGAAAGAGGGG 1222920 29 100.0 32 ............................. CAATTCTTCTCTTCCATAGGACTCACACATCA 1222981 29 100.0 32 ............................. GGACGCCCCCTGGGCGAACAAGCGGGAAAGCT 1223042 29 100.0 32 ............................. GCGTACCTGTTCAGGGAGCCGACGACTAGCAC 1223103 29 100.0 32 ............................. GCCGTCGTGATCCGCAGGTTCGTATGCCGAAA 1223164 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAGTACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGCTGGTCGAGGAGGAGATCGACGGCAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTGCTTTTGGATCAAGGGCTTGCGGTAAGT # Right flank : GCAACAGCTAGACGGCGCCAGCGGCACCGTTACGAGTTCCCTGATGGGCGGGGATGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGCTGCATCAACAACTCACCGTTGATCGTGCCGCGACCCCCGCATGTGCGGAATAAGCCTTCAGTCAGCCCCAGTTCCTCGATCATCTGTAGGAAGATGAAGAAAGCCACCGATTAATGCCTTCAACTATCTCATTTGGGTAGTCTTTATATTTGCTGAAGCTGTCAGGAAAATCTAAAATAAATGTCCACCGGGCTGTTACGATCGCCCGTTGGGGAGCAGACACAGATAGACATTTCCTGACATCAAGAAAAGGCATCCGGCTCACATGGAAAAAGGGGCGGCGCAATACTTTGCCTATTGGGGCAAGGCACGCATGCAGGAAGGTACCAGTCAGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1232783-1234459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABZEK010000001.1 Ralstonia solanacearum strain CCRMRs277 CCRMRs277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1232783 29 100.0 32 ............................. CGGGGCAAGAATGGAAGAGCATGGAAACTCGG 1232844 29 100.0 32 ............................. CCCCACTGACAGATGAGCAGAAGGACAAGATT 1232905 29 96.6 32 ............................T GAATCCAGCGTATGCGTTGCGGCAGGGCGGCC 1232966 29 100.0 32 ............................. CCGACAGATCTACTGATTCTTCGATTAGCTTC 1233027 29 96.6 32 ............................T CTTGAGCAGCGCCGATGTGCTACCGGGTGCCG 1233088 29 100.0 32 ............................. GCGCTTGGTGCGAAGTTGCTCCCGGACATGGT 1233149 29 100.0 32 ............................. CAAGCCCGATGTGAGCCATGTGCGCCCTTTAT 1233210 29 100.0 32 ............................. TCCATTCCAACGTGCAACTTGTCGCCGTCGCG 1233271 29 100.0 32 ............................. CGGGCCGAGCTATGCTGCCGGCCCGCTATGAT 1233332 29 100.0 32 ............................. TCGAGATTTGCTCCTGTGTGTTGGATGGTCTG 1233393 29 100.0 32 ............................. CCGATCTCCCGGGCGACAACATCCTGATGCCG 1233454 29 100.0 32 ............................. GCTCAGATCGAGTTCACGCGTTTGGCGCAGAC 1233515 29 100.0 32 ............................. GTGCAGTTCCACGACGCAGTTGCCGATGCCGC 1233576 29 100.0 32 ............................. CCGCCCGCAACTGGCTTGGCTACTAATCGGAG 1233637 29 100.0 32 ............................. GCTACCTGCAGGCCGATGTCCGCGTGCGCTAC 1233698 29 100.0 32 ............................. ATGAGTCAGCAACTCGCCGATTGCTCGCAATT 1233759 29 100.0 32 ............................. TTGAGAGTCACTGAACGTGTACGGCGTGAATG 1233820 29 100.0 32 ............................. CCCTACATGGACCTGCGTGCGCCGATGTTCAG 1233881 29 100.0 32 ............................. ACGGCGTTCGCGGAGCACATCTCTGGGGAGAT 1233942 29 100.0 32 ............................. CTCGTACACTGGGGATCGAACCCTATCATCGC 1234003 29 100.0 32 ............................. GATTTGCGGCCGGACTGGCGCGAGATTTGGCC 1234064 29 100.0 32 ............................. CCTAGCGTCATGGGCAGCGAGCTATACGGCAA 1234125 29 100.0 32 ............................. CTATTCCAGCTCCGTGAACACGGCCACGCGCA 1234186 29 100.0 32 ............................. CCAGACGACGGAATGATTGCAGCTTGCTTAGC 1234247 29 100.0 32 ............................. CAGTGTTTGGCAATCGAGCGCCTCACGCGCGG 1234308 29 100.0 32 ............................. ATGAGTGGGTTACCCGTCGCGGCGGCTTTTAT 1234369 29 79.3 32 ........T...TAC.........C..T. CCCGGCGCCGGCGGGCTGAGCGGTGTGAGCCT 1234430 29 86.2 0 ...........A.A..........CG... | C [1234435] ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.5 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCTATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTATACATCGGCGACGTCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCCTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGTGGCGGGATTTTTGGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : GCCAGTGGCCATCCAGTCGATGTCACGACCCGGATGCCGCTACACGCTACACACTAGTGCCAGCTTGACCGCGCCTTCCAGCCGTTCCTGCACAGAGGCAAGGGCGCAGCGCGTCCGGGCCGCTGGCGGCGACGCGACGTCGCCGCAGGGCTGGATCAGTCCGCCAGCGCAGCGCGCGCAGCGCCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGTTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //