Array 1 18758-19296 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUX01000029.1 Streptococcus oralis subsp. dentisani strain RH_9883_08 s_oralis_RH_9883_08_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ====================================================== ================== 18758 26 100.0 47 .......................... TACGTTGTAAACCGTATTAAAGAGTTGGTACGCTCTAACAAAGAAAA 18831 26 100.0 47 .......................... AACGAAGTAACTATAACTGTAGTAAACAACATTCCTAAGTTTGAAAC 18904 26 100.0 43 .......................... TACAAAAAATCGATAATGTTGCTGCGTTGATAGACGCTTGGGT 18973 26 100.0 42 .......................... AACTAAAGGTAAAACTGGAAATTACTCAATACATATAGCATC 19041 26 96.2 54 .........................G AACGAAAGGTGACTCAATTGTAATTGATTACACTCGTCTTTTCGATGGCAAACA 19121 26 96.2 47 .........................G AACCCTAAATCAGAAGACCCAACTAACTTCCCAGTATTCAGTATTGG 19194 26 96.2 51 T......................... AACCTAATATCTTCCAGCTTTGAAAGATATTATCATGGCACGTGACGGAAA 19271 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ====================================================== ================== 8 26 98.6 47 GTCTCAATTCCTTATAGGTAAGGTAT # Left flank : AAACCGCCCCTCTCCATCTAGAAAGGTTCCATCCATATCGGTTGCTACAAGTTTAATCATAAAATCCTTCATACTCCAATTGATAAATCTATCTTCTATTATACCATAGATAAGCTAAAAAAGGACTAGTACAGTAGGAGTGGCTGCTGGATAGCTGTTCTTTTTCGGTAAATGAAATAGAACAGAATGTTTTTAATTTAACCCAATAGACCAATAAATATTCGCAACACTATCACGAAGTAACAAAAAACTGACCAGCCATCTAACTTAAACTCTATACTATCATGGTTGAAACACGGAAAAAACTCTCCTACTAAGAGAGTTTTTCTTGATAATTTTTACAAAACAAAAAGCGAACAAATTCTCAGGCTTCCCAGCAGACAAGAATTTGCTCGCTTTTTTGGTGCCTTGGAGACAGACAAAGACACACGGACAATATTTTATAGGTAATCTAGAACTTAAAAACCATCAAAATCCACATAATTAAAATGAAAGACAGT # Right flank : TAACAACAGTAATATCGCTGTTTCTATATTGATTTTATCAAAAAACAGGGCTTTTTTCAAGATTGCAAAATCTTAGGCACGCGCTTGTGATGAAGATCGTATGTCAAGATAATCTACATTTATTTTCGCTTTTTGAAATAGATAAAAGCAATTGTCAAAAGAGGAATAAGCAAAGTAAGCCAAGATGAATACGTCAGGCTCAGATTGCAAATCGTCAGACAGTGTTCCTGCAGTTCTTTGATATTCGGAATGATTGCTAATGCAATACTTAAAACGGTTAGTACTAATACTCTGTCATTCAATTTATTACTTGCTTCCGTCTGGCTGATATCATGCAGTTCTCTGATTTGACTATCTAGGAGATTGATATGCTTCTCGATATAGAGTGAGGTTTGCAGCAATTCGTAGATTTCAATCGCCTGCTCCTGCGGGCAAAGTTCCGGAAGCAGGTATTGATTTTTAAAGGTCGTGTAAGCCTTCTGCAGCTTTAGTTTATCAGA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATTCCTTATAGGTAAGGTAT # Alternate repeat : GTCTCAATTCCTTATAGGTAAGGTAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 20979-22019 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCUX01000029.1 Streptococcus oralis subsp. dentisani strain RH_9883_08 s_oralis_RH_9883_08_ID_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================================== ================== 20979 27 88.9 44 AC......................A.. GATCAAGAGGAGCTAGAATATCTTCAAGGTATTCTAAATAAAGT 21050 27 100.0 44 ........................... GTTCCAATGGAAGAACGAATTGCAGTCAAATCAGAATTGACGGC 21121 27 100.0 44 ........................... GTAGTATTGCTATTTACACTCATTGGAATTTATCAGAAAAAAGT 21192 27 100.0 45 ........................... GTGTATATGGATGTGAAGTATATGAAAATCCTGATAATGGATAGT 21264 27 100.0 48 ........................... TCGACTACGATTTCTTCAACAAACCATTTAAAGTTCAAAACGTTGAGT 21339 27 96.3 43 ...........T............... GGGTTCCGAAAGAAAACATCGAAATCCCTAAGCCGAAGAAGGT 21409 27 100.0 42 ........................... TATTCCGAGAAGGTGCTAGTAAATATCTTGGGACTCTAACGT 21478 27 96.3 34 .........C................. CTATTATATCACAAAGGAGACAGAGAGTGAGCAA Deletion [21539] 21539 27 96.3 48 ........................A.. GGAAGTAAACCCTTGGGTGGCTGAGAAAGTTATTCCACAAATGGAAGT 21614 27 96.3 49 ........................A.. GACAAGAACAAGATCAAAGAAGATAAGATCCGTCCAATCATCAAAGAGT 21690 27 96.3 47 ........................A.. CGGAGCGAAAATCACTACTGGCGCTAACATCACTCAAAGTGGCAAGT 21764 27 92.6 47 ...........T...........A... TCAACGTAACAAGAATGCACAAGCCTTTGCAGCAGCATTCAACGCGT AG [21786] 21840 27 92.6 48 .......................GA.. AAAAACAGCTGGAAGTTGAATACCATAAGGCTTACGTTAAGGAAAAGT 21915 27 96.3 51 ........................A.. ATTCTAAGCACTATCAATCCGAATTGTATCGAATTTCATGATGAAATAAGT 21993 27 96.3 0 ........................A.. | ========== ====== ====== ====== =========================== =================================================== ================== 15 27 96.5 45 CTCAATTCCTTATAGGTAAGGTATTAC # Left flank : ATTTATCATAGAGACGATTTTCCATTGAGAAAATCAGGAAACCTGCTTCTAAATTTGGTAAATAACGAAGCATGATATAGTCAAGCGTCAGGTCATAACACTCAAGTTTGTTAATTTGATTATAATAAGAAATCCGATACACATCACCTTTTTCTAAGCCAGTATAAGCATAGTTTGTGACTAGCTCAGGATTGCGGAAAATCAGCTCCTCTGCTTCTTTATTAAAATATCGGCGATAAGCGTACTTTAATCGCTCGCTTTTTTCACCATCTTCTACGTTCAGATAGGGGAGTTCATTGGCATCTTGGCTGAGTTTCTTCCAATTGGAAGACTTCGGAAAAGACTCCAGCCCCTTGGCCGCAAAGGGCAAAACAAAGATATGGTGACTATATACAGATTGACTCTCAGACATAAACAACCTCCGATAAAGACATTCAACATGAAAGCACTTCCAATATACCACAAAAAACTTGCTCTCGCAAGTTTTTTCAGTTGAAGCA # Right flank : CAACAACAGCATTTTCGCTGTTTCTAGATTGATTGTATCAAAAAATAGGGCTTTTTTCAAGATTTCAATGAAAAAGTCGGTCGATCTTTTTTGTCCTAGCGCTCTTGCCAACTAAGATTGAACTCCTGTACGATAGCTAACTTCACTTGTTTCTAAGCTCTTTGTAAATACGTTCTTATATTCAGGCTCCTTAATATGAACAAACTCCTCTATACCCTTTCGAGCTATCTGAGTTGCGCGACTCCCTCAGATACGATTTGTAAATACCCTTCTGCTACTCTAACTGTCCGAAACCAACATTCGTTTTGGCGCCAATGCCTACATCAGTCAAGATAGTTTTAAATAACTCTATTTTTTCTTTAACCGTAATTTGAACTCCATCTGAAAGCTGACACTCATTCAGATAAAAGCCAAATTCAAAAGAGATTCCAGGCTTAACCTTCAGACAGTTGATTGGAATAGGACTCTTGATAATGTCACTATGAGGTGTAATGAATTCC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAATTCCTTATAGGTAAGGTATTAC # Alternate repeat : CTCAATTCCTTATAGGTAAGGTATAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //