Array 1 162156-160252 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIS01000002.1 Salmonella enterica strain BCW_5848 NODE_2_length_399716_cov_3.3733, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162155 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162094 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162033 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 161972 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 161911 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 161850 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 161789 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 161727 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161666 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161605 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161544 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161483 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161422 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161361 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161300 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161239 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161178 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161117 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161056 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 160995 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 160933 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 160830 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 160769 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 160708 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160647 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160586 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160525 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160464 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160403 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160342 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160281 29 96.6 0 A............................ | A [160254] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179780-178287 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIS01000002.1 Salmonella enterica strain BCW_5848 NODE_2_length_399716_cov_3.3733, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179779 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179718 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179657 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179596 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179535 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179474 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179413 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179352 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179291 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179230 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179169 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179108 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179047 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 178986 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178925 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178864 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178802 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178741 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178680 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178619 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178558 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178497 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178436 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178375 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178314 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //