Array 1 184675-183968 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014509.1 Thermotoga caldifontis AZM44c09 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 184674 36 100.0 35 .................................... TGTATAAGTGAAGCCAATAATGCTCCCATAGCGAA 184603 36 100.0 41 .................................... AAGCCATGGACTGGAACATACGATAACCGATTAGAAGCAAT 184526 36 100.0 41 .................................... ATAAGATCTTTTATTATTGACCATTCAGACATAGAATCACC 184449 36 100.0 37 .................................... TATTATCTAATTTAACAGGCAAAGGTGGGTAATCTAA 184376 36 100.0 38 .................................... TTTGGGGATGAGTGCAAATGATAGAACGGCTAGCCAAA 184302 36 100.0 37 .................................... TGGAAATCGAGGCAAAAAAAGAGCCTGTGCTGGTTGT 184229 36 100.0 41 .................................... TCAATAATCTTGGAGACGCGTACGATTGTGAGTGTGCCAGT 184152 36 100.0 38 .................................... GGTGTGAAAGCGACGCACATTGCGGCACTTGATCCGGG 184078 36 100.0 39 .................................... GCTCATAAAACGGGCGTTCATGTCTACACCGTTCGAGCA 184003 36 94.4 0 .T.....A............................ | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 99.4 39 GCCTCAAGACCAAATTCCGTAGAACGGAATTGAAAG # Left flank : CAGCACTTACATTCCTTTCACGGTGACAAAATGAACGATCACAGAGAGGCCTACATAGTTACGTACGACGTCTCACAGGACAAGCTACGAAACAAGGTTGAGAAGATCATGAAAGAGTACGGAGTGCGCGTGCAGTACAGTTGCTTCTACTGCCCTATTGAAAAGAAAATACTGCTGCAGATTTTGATGAGATTAGAAAAGATCATAGACAAAAAGACAGATTCTGTGATCGCCGTTCCACTCGAAAAGGATTGGGAAAAGTACGTGATAGGCACGCTGAGAAACGATCCAAATTTTGAGATTAAAAGGGTCGTCTGATTACGCAGACCTTCTTTTTCTGAAAGGCCGCCACCCTTCGCGGGCGGTCGTTGAGGCTTTCTAAAAGCCGATTTGAGAGGCACCGGTTTCTGATAGCTGTATTCTATCCAATGTAGTAGAAAGAATGTCTGCGAAAAAGTACTTCCGAAATCATCATAGGAAAATAATTTTTATCGCCCGGT # Right flank : ATATCGTGAACATCGCTCTTCCCAATGCTGTTGACGGCATTGCTGTCCTTATCATCCTGTGAGGAATTTGAACGAAACAGGTTTGGTCATCGCTCGCGTTTCTGGAAGTAGTCTCTATCGTCCTATAGAGAACTTGAAGACGAAAACCTGGCTGGTATAATTCATCAAATGGGGATACTGTTTGCATCAGTTCCTTATTTTTGTGTTGAATTCATTTCAACTGGAGCGAAGCTTATGAATGCGGAAGCTGTGGCGTTGGAAATTCAAGAGCCGTTGAAGAAATTGACCTACCTTGAGAAGATCCGCAACCGGTTGTATGTGGAGTACTACATTTCCAAGCGCAGTGGCGGTAAAAGAGAGATCTGCGTCTATCTGTGCGACTCCAAGGAAGCCCAAGCAAGGCTCAAAAATAAGCTTCGAACGTTGAAAAAGAACGATGCAGAGCTAGAAAAACTGGTCCGAGCAGCACAGGAATTGAAGACGGTGCACAGGAAGCTGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAAGACCAAATTCCGTAGAACGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 2 885882-883908 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014509.1 Thermotoga caldifontis AZM44c09 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 885881 30 93.3 38 .C......................C..... CGAAGGAACACGAATACGTTTCTACATTAAGGAACCGA 885813 30 100.0 37 .............................. GGTAATCGGTAGGGAAGTAGAAGTGAATAGGGGAGAG 885746 30 100.0 37 .............................. AAAGGGCATCGGCGCCTGGTGACCAAGAAGTCAAAGT 885679 30 100.0 37 .............................. TGACAAGACGGTTCTTACTTACACGTTTACAGGATCT 885612 30 93.3 37 ..CG.......................... GCAAATTAATAACATTAGTGCTGTCACAGATGGAGCC 885545 30 100.0 37 .............................. GTTGTACCGCGCTGCTTGAGCGAGTCCAGCAGCCTGT 885478 30 100.0 38 .............................. AATTGTTAGGCCTTACGATCAGTTTCCAACTCGAGGGC 885410 30 100.0 37 .............................. TTGTACGTGCATAGCGGCAGAGTATTGACCGCTTGAG 885343 30 100.0 38 .............................. CTTGTAGCGGGCGGACAGAAAGGAGGTGAATTTTGTGA 885275 30 100.0 36 .............................. GAGGCTCTTGCTCTTTTTGCCACACGTCTTTATGGA 885209 30 100.0 38 .............................. AAAACTGGGCCTCAAGTTCGACTACCACCTCGAGGACT 885141 30 100.0 37 .............................. ATGTTGAGCAGAGTGCACTGCTCGATCAGCTCGGCAG 885074 30 100.0 37 .............................. TTGGCTATCTGTGCGATTTCTTCCACCGTCCACATCT 885007 30 100.0 36 .............................. TGAATCTTCAACCACGAACCTTTGCGGTGTGTAACC 884941 30 100.0 36 .............................. ACGATTTGATGAGATCTTCTTTGTAGACTTACCCAC 884875 30 100.0 36 .............................. ACTCGATCCCGCCAGATTCCTTGAATGACTCCAGCT 884809 30 100.0 36 .............................. GACTCTCCGGTATCGTACAGGGGATCAAAACAGCGT 884743 30 100.0 37 .............................. CCAAGAAAGCAAGACTTAGAAGAATTGTGGCTAATTC 884676 30 100.0 37 .............................. CAAGAACTTTGGTTGTTGCTAGAGATCGCTCAAAAGT 884609 30 100.0 37 .............................. AATATCCGCCGCTCGGGTCCGTAGCTCCATCAATCCC 884542 30 100.0 36 .............................. AAGGAGGTGAAAGCGTTGCTCCAAGAACTAGAACGA 884476 30 100.0 39 .............................. GCAAAGTTTGCCGCGCAAATGTGGAATAAACCTTTGATT 884407 30 100.0 37 .............................. AGATTCAGGATGCTCATATAGAGGCGATATCAGCAGA 884340 30 100.0 37 .............................. TTTCGAGTATTCAGAGAGCATCATACGAAGAGGGTGT 884273 30 100.0 37 .............................. AGTTACAAGAATATGAACAACACAACCCAAAAAATCG 884206 30 100.0 37 .............................. TTCTCGTAGGCGGATCGGTTTATCGACGACAGGGCAA 884139 30 100.0 38 .............................. ATTTGTCTAACTTGAGAAGTGCTTTCAATGAATAATCC 884071 30 100.0 37 .............................. GAACAGAGCGCACCAGTCCGTTAGGGCAGCAATCATG 884004 30 100.0 37 .............................. CGTAAATTTCCTGAAAGTTATTTTCGCCCCAGCTGGA 883937 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 99.6 37 GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Left flank : CCTCGAAACCGTACGATATGACGAATATGACGTCTGCCCACTGTGCAGCTGTGATCAGACTCGGATAGTACAGCGAAGGATCGAAGTTGCATTCGATGACCCTCGTCTGAACCTTGAAGTCCTGTTCGATTTGCTTGATACCTGCGTATCCAGAATCGTAGAACGATTGATCCCCGAGCGAACCGTTAATGACGTAAGCAACGCGCGCAGGCTTGGCGAACAAAACGAGCGACAGAAGAACCATCACCAGCAGAGCAAACTTCTTCATCGTAGCACCTCCCAACCGAATTCTATCACTCAGGATTCACCAAGCGGGCAGGTGGAGCGGAGACAAGCGGTGAAACTCTGCTCTTCATATGAGTCGAGGGGATATCACTTCACAGCTTTTCTCAGGCTGGACCAACCGAGGGAGAATAAATCCGCCTCCATGGGGCGAAGTTTTTTGTCAGGTTCGATTGAAACGTCTATTTTGGGAGAAGGAGTCCGGAAAGCGAAAAAGT # Right flank : CCCATACTGTTCACTCAGATTGTACCACAACGGAATCGGGGTGCAATCGTCTAAGTGCTGGTTGAAAGAACCACAAACTGCACGAAGATGCACTCACATTCAGCATTATCTTCCATTCACCATCTTTCGGAAAACCCCCGGGGTTTTTCGGCTATCGGAGGTTTCCCCAAAAAGTGCCGTTTTTCGAGGGTGTGTGTAACATTTGAAGGTGTCGCTTTGTGACTTTTCACAAAGTGAATGGATCTTCTCCAAGAGTGAATCATCACACAACGATGCAAGCTCATACAAGCTTTTTTCACAAGCATTAGTCTCTTCTAACTCACAATGAGAATTTTGTGCGTTTCAGATATTTGTTCTTCAAGATAGGGGGGTTTCCCCCTGAATGTTGCTTCACTATTACATAATGATTAAGCGAGCTTTGTGCAGAATTGAAAGGCATCTGAGAGTGGTGCGTTTGTGTTTCATGCTTCTGAAAACGAAGATCTATCTGGCAAGTGAGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCTCTAAGGTTCGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA //