Array 1 676-209 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JQPY01000319.1 Leptospira interrogans strain 56656 Contig319, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	====================================	=======================================	==================
       675	    36	 100.0	    34	....................................	TTGATCAATTCCTTTATTTTTTTGGAAAAAAATT     	
       605	    36	 100.0	    39	....................................	CCAAAAACGCGAAGGAACCCATATCAACTAAAGACAAAA	
       530	    36	 100.0	    35	....................................	CTGTCCCGCCCGATTATTTTGTAGTGGATGCAATT    	
       459	    36	 100.0	    35	....................................	GTGTTCCTGCGCCTGGGTTTAAATTGTTTTTGAGT    	
       388	    36	  97.2	    36	.....................T..............	CGGGGATTCGGATTTTCACCGCTCGAAGCGTGTATC   	
       316	    36	 100.0	    35	....................................	GATCTTACGTTATCCTTGGAGGACTTGAACCGTCC    	
       245	    36	  88.9	     0	.....................T........T..A.T	|                                      	A [216]
==========	======	======	======	====================================	=======================================	==================
         7	    36	  98.0	    36	CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC	                                       	       

# Left flank :   TAACTTTGATGCCGGTAGGCGTTGAGCACAAATCAAAGATAAGGATCAACTCGAACGCGTTGTAA
# Right flank :  TGAAGAAAAGATCTGTTTTGATCGCAATTGCTCCGTACAAAGGGCACAAACGGATAAAATGTAGGAACTACTGCTTTTCCGAAAAACAGTACTTTGTTCAAAGAAATGTGGGAACTCCCACTTTGAAAAAAGAAGGTTTCTGCGTCTCTTAAGTCAAACTTACAAAAATCGGGATGCCGTTAGGCGTTGAGCACTGTCAGTGACGGCGA

# Questionable array : NO	 Score: 3.16
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTGAATATAACTTTGATGCCGGTAGGCGTTGAGCAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:52.78%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.00,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.78   Confidence: HIGH] 

# Array family : NA
//