Array 1 322323-323876 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXO01000001.1 Escherichia coli strain MOD1-ECOR29 ECOR29_1_length_435521_cov_80.9063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 322323 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 322384 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 322445 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 322506 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 322567 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 322628 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 322689 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 322750 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 322811 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 322872 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 322933 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 322994 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 323055 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 323116 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 323177 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 323238 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 323299 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 323360 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 323421 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 323482 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 323543 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 323604 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 323665 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 323726 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 323787 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 323848 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 339378-340017 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOXO01000001.1 Escherichia coli strain MOD1-ECOR29 ECOR29_1_length_435521_cov_80.9063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 339378 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 339439 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 339500 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 339561 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 339622 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 339683 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 339744 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 339805 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 339867 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 339928 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 339989 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //