Array 1 1738904-1740581 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLI01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03344 2014LSAL03344_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1738904 29 100.0 32 ............................. AGCGCCGATCCGGTGGTGTCCAACACAACGAA 1738965 29 100.0 32 ............................. GCTTCTGATTGCATTAGCTCCAAATCAGTACC 1739026 29 100.0 32 ............................. GCGTCAGGCGTGGTGGCCGTGATTACGGACGA 1739087 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1739148 29 100.0 32 ............................. GGCTAACCCATGAACACTATTACCAAATTCAC 1739209 29 100.0 32 ............................. GTTGCCGCCCTTACTGCGCGAGGCGTTGGAAC 1739270 29 100.0 32 ............................. GAGGGGCCGTCTGCCGCATATCAAACGCTATC 1739331 29 100.0 32 ............................. CAACACGAAAGAAAAAATACTCAATATTATTG 1739392 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 1739453 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 1739514 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 1739575 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 1739636 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 1739698 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 1739759 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 1739820 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 1739881 29 100.0 32 ............................. CTTGCAGCCGAATACGGTATAGAGTGGGACGG 1739942 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 1740004 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 1740065 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 1740126 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 1740188 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 1740249 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 1740310 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 1740371 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 1740432 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 1740493 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1740554 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1756840-1758821 **** Predicted by CRISPRDetect 2.4 *** >NZ_PCLI01000001.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03344 2014LSAL03344_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1756840 29 100.0 32 ............................. TTGAGGTTTGCGTTGAGCCTGTTCAGCATCAC 1756901 29 96.6 32 ............................C GCTGACTCTGCGGCGGATCTTCTCAACCAGTC 1756962 29 100.0 32 ............................. CCTAGAAAAGTTTGTTTAGGCAATCAAGCCCC 1757023 29 100.0 32 ............................. GTGTTAATTAATGAGTTTATTCCGTTTTAACA 1757084 29 100.0 32 ............................. AAATTTGGTTGACAGTAAAAGAGTGTGTCGGT 1757145 29 100.0 32 ............................. TCGGCTCGAGCACTTGCGACAACAAACACACG 1757206 29 100.0 32 ............................. GCGTTGAACTTGATATTCTCTACACCGATGCA 1757267 29 96.6 32 ..C.......................... ATATGAGGCAGCTCGCTGGCGGCTGGGATGGT 1757328 29 100.0 32 ............................. CCGTTTTTTTCCCACAGTTTGCCACCGAGACG 1757389 29 100.0 32 ............................. TTAAGTCGCTCTTTGTACGCTACACCGGAGGC 1757450 29 100.0 32 ............................. AAATATCCAGAGCTGGGCTTGAGGCTGACGGT 1757511 29 100.0 32 ............................. TAATTGACATACATTCACCATATTAAGGAAGA 1757572 29 100.0 32 ............................. CCATGCGCGGCGGCGCTTGCCCAGCTCAGAAA 1757633 29 100.0 32 ............................. GTAGTCTTCATATGCAGCGACATCATTGCCGA 1757694 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 1757755 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 1757816 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 1757877 29 100.0 32 ............................. CAGGAGTGGCTGGAGACTGTCGTCAAGCCTGA 1757938 29 100.0 32 ............................. GACCTATCAGCCTAATTTCCGGGGCAAGAGCT 1757999 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 1758060 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 1758121 29 100.0 32 ............................. GCGTTTATTTTTGATTTGTTATTTGGACGTTA 1758182 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 1758243 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1758304 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1758365 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1758426 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1758487 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1758548 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1758609 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1758670 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 1758731 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1758792 29 96.6 0 A............................ | A [1758818] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTCAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //