Array 1 1371646-1371281 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP012911.1 Streptococcus suis strain NSUI060 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1371645	    36	 100.0	    30	....................................	TCAATACGTGACGTATATTTCATAGGTTCG	
   1371579	    36	 100.0	    30	....................................	TAGTAACAAATAAAGAAGTAAAAGAGGAAA	
   1371513	    36	 100.0	    29	....................................	GGATTATTGAGTGGGTTAACATCTGCAGG 	
   1371448	    36	  97.2	    30	A...................................	AACATCAATGTATTTCTTTTCGACCTTGTC	
   1371382	    36	 100.0	    30	....................................	CTTCTGGTAGTTATCCCCATAACATTTGTA	
   1371316	    35	  83.3	     0	.......................T..T.-....TCA	|                             	T [1371292]
==========	======	======	======	====================================	==============================	==================
         6	    36	  96.8	    30	GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC	                              	       

# Left flank :   GGGGCATAGAGACCAGTTTTCGTGACCTAAAATACAGTATCGGTCTGACTCATTTTCATGCAAAAAAGAAGGAAGGGATTCTCCAAGAAATCTACGCTCGCTTTATCAATTTTAATGTTTGTAAATGGCTAACCTCACACGTTGCTATTAAAACATCAAAGTTAAAACAGACTTATAAAATTTGTTTTTCAGACGCTGTTTATGCCTGTCGAAAATTTCTTAGAAACAAACTCACTTCCTTCCAATTAGAAACCTACATTGCCAAGCATTTATCCATCATCCGACCCAATCGAACGTTCCAAAGAAAGATAAAAAGCAAGGCACCTGTAAGCTTCACTTATAGAGTAACATAATAGTTGAAAAATAGGGATAAAAAACCTCCTTTTTGTGCGCCCTAAATACAAAAACTATTCCCGTTTTGTCATGAACTGCTCAGACGAGAATAGTTTCTTTAGCTGCTTAAATGCTTAACTTAATGACATTGGGTTGCCATTGAGACC
# Right flank :  TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCCG

# Questionable array : NO	 Score: 6.10
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.70,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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