Array 1 44888-45831 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCK01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2699 NODE_1_length_226139_cov_4.19934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44888 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 44949 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 45010 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 45071 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 45132 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 45193 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 45254 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 45315 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 45377 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 45438 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 45499 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 45560 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 45621 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 45682 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 45743 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 45804 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62114-64197 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCK01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain BCW_2699 NODE_1_length_226139_cov_4.19934, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62114 29 100.0 32 ............................. CAGAAACTTAGACAAACTCAGGCTCCTGATTA 62175 29 100.0 32 ............................. ACCACTGTCCACAGTCTGTCGGCGAACTACCG 62236 29 100.0 32 ............................. CGCCCGCTGGTGGCAGCGTACCGCCGCCGGGA 62297 29 100.0 32 ............................. GCTTGGTAATTACTATGCCGAGCTTATCAAAC 62358 29 100.0 32 ............................. AATCCACATATGTGAAACTCCAAGGAGGTTTG 62419 29 100.0 32 ............................. GCCGTTACTGAGCGCAGCGGGTTAGAGGTAAA 62480 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 62542 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 62603 29 100.0 32 ............................. ACCGGCATTATGTCGGGCCGCGCGCTGACATG 62664 29 96.6 32 ......A...................... GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 62725 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 62786 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 62847 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 62908 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 62969 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 63030 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 63091 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 63152 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 63213 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 63274 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 63335 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 63396 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 63457 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 63518 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 63579 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 63640 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 63701 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 63762 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 63823 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 63884 29 100.0 11 ............................. CGGCCAGCCAT Deletion [63924] 63924 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 63985 29 100.0 32 ............................. GGCGATGCGGGCGCATTGTACGCGATGCAGAC 64046 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 64107 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64168 29 93.1 0 A...........T................ | A [64194] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //