Array 1 40356-39352 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGPC010000003.1 Escherichia coli strain 4833 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40355 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 40294 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 40233 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 40172 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 40111 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 40050 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 39989 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 39928 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 39867 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39806 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39745 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39684 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39623 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39562 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39502 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39441 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39380 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57533-55857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGPC010000003.1 Escherichia coli strain 4833 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57532 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 57471 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 57410 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 57349 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 57288 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 57227 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 57166 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 57105 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 57044 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 56983 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 56922 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 56861 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 56800 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 56739 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 56678 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 56617 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56556 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56495 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56434 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56373 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56312 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56251 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56190 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56129 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56068 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56007 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 55946 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 55885 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //