Array 1 284454-286161 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJJ01000003.1 Moraxella catarrhalis strain 78/325/3 NODE_3_length_358460_cov_22.054656, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 284454 28 100.0 32 ............................ CAGCCGCCCGAGTTGTACGCATAAAATGCCGT 284514 28 100.0 32 ............................ TGCACAACTTGCTAACAAAGCAAGCACAGCAT 284574 28 100.0 32 ............................ TTGGGTGAGCTGGAAAAGAAACAAGCGAGCCA 284634 28 100.0 32 ............................ TACATACAAAGGTTTGTTACTGGTAATTCTGT 284694 28 100.0 32 ............................ TTCATATTGCAAGATTTCAATAGTATAATCTT 284754 28 100.0 32 ............................ ACGCTCCAGCTTGATCTTATCAATGCGACTTT 284814 28 100.0 32 ............................ TAAAATCATAAAAAACCACTGTGTTTTATGGC 284874 28 100.0 32 ............................ AAAAGGTACAGGCGGTAACGCTGGAAAAAAAT 284934 28 100.0 32 ............................ GCCCACACACGCACACTACCCACTATCCTTAA 284994 28 100.0 32 ............................ GATTATGGCTACCAAATACACATAACCCCCCG 285054 28 100.0 32 ............................ GTTTTTTCACCAATGCCAAACATTGCTTTAAG 285114 28 100.0 32 ............................ TTGCTAAGCTTGAAAAAGAATTTGGGCGCTTT 285174 28 100.0 32 ............................ CTGCATACACACCTGTGATTTCAATGCTGTTT 285234 28 100.0 33 ............................ GCCAATCTTTGCTGCTCCTGCTGGACTTGAATT 285295 28 100.0 32 ............................ TAAGTGCTGAATTAGAGCGTTATGCGTTAAAA 285355 28 100.0 32 ............................ CCTAATTCAATCGATTCAAAACCAAAAATATT 285415 28 100.0 32 ............................ AATCATACTTGAGCAATACGAAAACAAGAAAA 285475 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 285535 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 285595 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 285655 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 285714 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 285774 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 285834 28 100.0 32 ............................ AGCTTGCAAATAAAGCAAGTACAGCGTCAGTT 285894 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 285954 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATC 286014 28 100.0 32 ............................ ACATCATCGCCGACATTTTGCACGATGACAAG 286074 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 286134 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.8 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //