Array 1 212512-210303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBL010000004.1 Salmonella enterica subsp. enterica serovar Reading strain HA3-DE2 YZU1233_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 212511 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 212450 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 212389 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 212328 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 212267 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 212206 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 212145 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 212084 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 212023 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 211962 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 211901 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 211840 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 211779 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 211718 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 211656 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 211595 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 211534 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 211472 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 211411 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 211350 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 211289 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 211228 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 211167 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 211105 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 211003 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 210942 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 210881 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 210820 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 210759 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 210698 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 210637 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 210576 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 210515 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 210454 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 210393 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 210332 29 96.6 0 ............T................ | A [210305] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230510-228773 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUBL010000004.1 Salmonella enterica subsp. enterica serovar Reading strain HA3-DE2 YZU1233_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 230509 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 230448 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 230387 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 230326 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 230265 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 230204 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 230143 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 230082 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 230021 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 229960 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 229899 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 229838 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 229777 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 229716 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 229655 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 229594 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 229533 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 229472 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 229411 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 229350 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 229289 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 229227 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 229166 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 229105 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 229044 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 228983 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 228922 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 228861 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 228800 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //