Array 1 149794-148848 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JYQL01000016.1 Salmonella enterica strain CVM 43768 43768_contig_16, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    149793	    29	 100.0	    32	.............................	TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 	
    149732	    29	 100.0	    32	.............................	GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 	
    149671	    29	 100.0	    32	.............................	GATGCTAACCACTATTTCATCCGCCTCGACGA 	
    149610	    29	 100.0	    32	.............................	CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 	
    149549	    29	 100.0	    32	.............................	CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 	
    149488	    29	 100.0	    32	.............................	ATTGATCCAATTAACGTAGCTGCAATGTTTGT 	
    149427	    29	 100.0	    32	.............................	GCCGCGCATGACATCGAAAAAATGTGGGAAAA 	
    149366	    29	 100.0	    32	.............................	CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 	
    149305	    29	 100.0	    33	.............................	GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC	
    149243	    29	 100.0	    32	.............................	ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 	
    149182	    29	 100.0	    32	.............................	TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 	
    149121	    29	 100.0	    32	.............................	TTACTGAAACGGATAAAAAATAATCAGGGGGG 	
    149060	    29	 100.0	    32	.............................	GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 	
    148999	    29	 100.0	    32	.............................	CGCAACTATCCATGCAAATATTTCCATTGCTA 	
    148938	    29	 100.0	    32	.............................	GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 	
    148877	    29	  96.6	     0	............T................	|                                	A [148850]
==========	======	======	======	=============================	=================================	==================
        16	    29	  99.8	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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