Array 1 1905466-1904782 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LS483435.1 Neisseria elongata subsp. glycolytica strain NCTC11050 chromosome 1, complete sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=================================	=================================	==================
   1905465	    33	  97.0	    32	.C...............................	AGGGTCAGCCAGGCCCGGCTGCCGATGATGCG 	
   1905400	    33	  93.9	    33	GA...............................	ACAGAAGAGAAGCCCGACAGCAGGGCTGAACGT	
   1905334	    33	 100.0	    32	.................................	GGTATTTTTGGCATATTGCCTGCCGCGTATCA 	
   1905269	    33	 100.0	    33	.................................	TTTGCGACCGACCGAACGGCATTCCTGCTGCTC	
   1905203	    33	  93.9	    31	AA...............................	CTGCTTTGCCTGCTCGATAAGGTGGCTTTTG  	
   1905139	    33	  93.9	    31	GC...............................	ACCTGCTCGTACACATCGGCGTTCAGGGTTT  	
   1905075	    33	  97.0	    33	.A...............................	CGCGGTTTGCCGGTTTGGGATGGCCGCCGTTTT	
   1905009	    33	  97.0	    31	.C...............................	CCCGAACGTCCAACAGTGCAGGTTTTGGCCA  	
   1904945	    33	  93.9	    32	AC...............................	TCTCAATAAAGAACTGGCTGATCCGCTGCGCC 	
   1904880	    33	  90.9	    33	A...............T........G.......	CTCCTAGGGTTGGATGATGACGGTGGTGGTGAG	
   1904814	    33	  93.9	     0	.......A.................G.......	|                                	
==========	======	======	======	=================================	=================================	==================
        11	    33	  95.6	    32	TGCAGCCGCCTTCGGGCGGCTGTGTATTGAAAC	                                 	       

# Left flank :   TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGATGCAGAAGGGAAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCGCCCGATCAGTGGGTCGTTTTAAAAGACAAACTCTTAAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCAAAACCAGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCTAAGCTGTAGTCCTCATGAAAATGCGGCAGGGTTAGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGTGAATGCGGGTGTAACGGACAAGGCTGTGTTATACTCGCGTTAGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGACGGAACAAGGCTTTTAAGAGAGGC
# Right flank :  GATCGCCACCTCCTGTTTTGAAGAGGTATTTTGATCTACGGCGTTCAAACAGGCATAGCCAACAAAATATCCACGCTGGAATGAACTGCTGTTTTGTCAATATTTGAGGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACCAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGAGCATATGGAAATGCCGTCCCTGCATTCGCTGGAACATTTGATGGCCGAATTGTCGCGCAACCACTCCGATAAAATCGTGGACATCAGCCCTATGGGTTGTCAGACCGGTTTCTATATCGCCCTGTTGAACATGGGTGATTATGATGAAGTGTTGCAACTGATTGAAAATACATTGAAAGAT

# Questionable array : NO	 Score: 8.36
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TGCAGCCGCCTTCGGGCGGCTGTGTATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [7,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.00,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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