Array 1 186462-184094 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSW01000004.1 Pasteurella multocida subsp. septica strain NCTC11620, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 186461 28 100.0 32 ............................ ATTTTTGGCGTAATTTTGGCGTAATCGTATGA 186401 28 100.0 32 ............................ AAAGTGCTTTTTGCCTTTCAGACAACTCTTGA 186341 28 100.0 32 ............................ AAAAATATTCACCATCAGCAATTTCTCTTGAT 186281 28 100.0 32 ............................ ACGCAGCGATTTATATCGGTAATCAGCAAGTA 186221 28 100.0 32 ............................ ATTGTCGGTGTAACGGAAAGCTCGGGCGAAAA 186161 28 100.0 32 ............................ ATTTGTATGCAATCGAGCAATTGAATTTCTGT 186101 28 100.0 32 ............................ TTGGGATAACCTTTTCGATATTTTACGTGTAG 186041 28 100.0 32 ............................ TTGTGGGACTCAAACCCACACGCGTTTGATGA 185981 28 100.0 32 ............................ TCCTAATAATTAATTTTTTTAACAATTTTACA 185921 28 100.0 32 ............................ CGCGTCTTGCTTTCATGTGTATATAGTAACTA 185861 28 100.0 32 ............................ TTTATGTCTGGCTTACCTTGGTTTGAAGATCC 185801 28 100.0 32 ............................ AAAAAATAAAAATAATAACCCGTAATCTTATT 185741 28 100.0 32 ............................ AATACAGATGATAAAAACAAACGTTTAATTTG 185681 28 100.0 32 ............................ ACCAACAATCGCGCCCAATGTTGCCAAAATAT 185621 28 100.0 32 ............................ CACAAATATTCAGTATTTGTTACAACACTAAC 185561 28 100.0 32 ............................ ATGCATTGCTCAAATTTAATTTGTTGGGATTT 185501 28 100.0 33 ............................ AGTTATAGCAGAACACGCGGGGACGGCGTATAA 185440 28 100.0 33 ............................ AAAAGGTGATGGCTGGATTAGTGTGGAAGATAG 185379 28 100.0 32 ............................ ATACGTTGCCCACAATTATTTTGACTCAATTT 185319 28 100.0 32 ............................ TCATAACGCGCGAATTAGACCCCTTTTTGACG 185259 28 100.0 32 ............................ TGCATGAAAATTAGCAAGCACAACTAACTGTC 185199 28 100.0 32 ............................ CATTTCAGATCTATTTTACTCACTGATGTTTT 185139 28 100.0 32 ............................ TGTTTTTAATACTCAAGAAGAAATCATAAACG 185079 28 100.0 32 ............................ GACGCCTGAAAAATTCATTCTAAGCGCATTTT 185019 28 100.0 32 ............................ TCTCCACCCATAACACCCGTCAAAGACCTGCC 184959 28 100.0 32 ............................ TCAACCCATACCCTACCCTAACTTAACCCTTA 184899 28 100.0 32 ............................ AAGCATGAGGGAGGCACCAAGTCCACCAACCA 184839 28 100.0 32 ............................ AGAATAAACATTAACTCGATAACGTTTACCAA 184779 28 100.0 32 ............................ AAACGCAAAATGTGAACTTTTTAAATTTTCTA 184719 28 100.0 32 ............................ ACCCTAATTTTACAGAAGATGGGAATCTTTAT 184659 28 100.0 32 ............................ AGAAAAATTAATTGCGAGCGCTTGTTTAATAT 184599 28 100.0 32 ............................ AACCCACACTTGCCAATGCGCGTTTTGCTCAT 184539 28 100.0 32 ............................ ATTCATTAGAACTAAAATATTAATATAATTGT 184479 28 100.0 32 ............................ TGATGCTCTTCACATCCTTCCCATTCTTGCAT 184419 28 100.0 32 ............................ TCCACTTGATGAAGAATCAGAATTAGACTGAC 184359 28 100.0 32 ............................ AGGGAGCGGTAAATCTTATGAAGTTGTCAGCA 184299 28 100.0 32 ............................ ACATCAGCAACCATAGCATTGAGCTGTTCAAT 184239 28 100.0 32 ............................ TTTTATCTTCTTCAGTTCAACAAAATCTGAAT 184179 28 100.0 31 ............................ AAAAGGCAGTAAATGACTTAGAGAAAAAAGT 184120 27 89.3 0 ........-...............A.C. | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.7 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTATTGCGATCTGGCTTATCAGACTATGCTTTAATTAGCGAAGTGAGTAAAACACCGTCGCCTACCGAGCATCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGTCCATCCGCGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGTCACAGCGCAACCGTGCCTCATTTTTAATCTCATTGTTAACCCTTTTTTCTTACTTGAAAAATTTTCAAATAAGATCAAAGGGTTATTAGTGTTCCCTAAAAAAGGGTTTTCTTCTCAGATGTTCTTTAACAAATTGAAATATCCAAAGATATAACAAAATTCATTTA # Right flank : CTCATAATCGGAAGAGAGCGAGTTTGAATCGTTAATTATCAACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACCTCAGTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCCGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGTACACCATTGTTTAATGGCACTGAAGCCGAGATTGGCTGTGAGTTTTTTAGCCCACAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 292043-292791 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSW01000003.1 Pasteurella multocida subsp. septica strain NCTC11620, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 292043 37 100.0 36 ..................................... CAATCTTAATTCAGAATAGTGATCTACTTTAAATGT 292116 37 100.0 33 ..................................... GTTTAAAACGCCTGCTTTGATGAGCGTAAGAAT 292186 37 100.0 33 ..................................... AAAATCCCTGCTCGAATGAGCGTAAGAATTTGT 292256 37 100.0 34 ..................................... CGTGTTCGTTGATAAATTCAACCACTTGTTCTAA 292327 37 100.0 33 ..................................... CGCTTTTTAATTACTTGTAGTTTGCCTTGCACG 292397 37 100.0 35 ..................................... AATCTTTAGCTTTCATTTTAATGCTTCTGATAGGT 292469 37 100.0 35 ..................................... TTTTAATTCTGGATCATTACCTAAATATCCCATGA 292541 37 100.0 35 ..................................... AACGGTACAACTCAGCGTTGAAGAAGGCTCGCACC 292613 37 100.0 34 ..................................... GGTTTTTTACATTCCATGCAGTAGAGTGTGCTAT 292684 37 97.3 34 ....................................T TAATCAATTTAGATACAGTTTTTTCTTCCTTTCT 292755 37 75.7 0 ...........T.A........C...A.A...T.TTT | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 97.5 34 GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Left flank : CAACAAACATTTTCGCCAAACGCACGGGGGTTTCTTCTAAACTATCATCGCGTAAATCTAACCCAATCAGCTTCATCACTTCACGCATATGTTGTTCAATCCCCGCTCGACGCGTATCTCTGTCTTGTTCTGGGGTAATCATTGGGGTTTCAATCCCCTTACTTAATAATGCATTGCGGACTTTTTCTGCTTCTGGTGAAATCTTGTTCATGTAAAACTCCCGATAAATAATCCGCACATTCTAGCAAACTCTCGCCAAAGTACAAATGAGAATAATTGGTAGAGAGGATGAAAAGTTTTGAGTTAAAACACGTTTTATAAAAAATAGACATAGTATAAAAAATAAACTTGAGGTAAAATAACCAAATTCTTTGGCTGACAGACTAGGTTTAAGTTGATTGTTTTTTGTTCAAATCAAGGGGTAGCTTTCCACATCAATGAAGAAATTGGGAAGCCTACAGATAACATTCTGAATACAAAAGAAAAATCCACCTATTACA # Right flank : TATGTAGCGTGGGCATACTTGTCCAGCACATAACCCCTACGCTTTCCCATTCGAAAGTACGATCATTTTTCAAAAAGTTTTACAGCTTTATCTCTGCTTATTTCTTATCAGTATAGGCTCAATAAAATGAGATCATCCTGCGTTTTTGGTATAAAATATTGCCCGTTAAACTCAACTAAGGATTCAATTATGTTGCCTCTTGAACAAGCACTGACTCAAATGCTCGCTATGTTGCCAACACCTGATTGTGCGCAAGCCGAACAACTCCCCCTTCAACACGCGGTGAATCGCATTTGTGCTGAGGATATCATTTCCCCGCTTAATGTGCCCTCCTTTGATAACTCGGCGATGGACGGCTATGCGGTGCGGCTGGCAGATTTAGCACAAAATTTAACTCTCACCGTAGCAGGAAAATCCTTTGCGGGCGCACCTTTTGACGGAGAATGGCAAGCACAAAGCACGGTCAGAATTATGACAGGGGCAATGTTGCCAGCCGGTGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACTGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 377348-378028 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSW01000003.1 Pasteurella multocida subsp. septica strain NCTC11620, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 377348 37 100.0 35 ..................................... ATAAGCACGGATTGCTTTTTCTTGTTCGGCTGTTA 377420 37 100.0 35 ..................................... TGATTTATTTTAATAACTCTAACGCTTTGTATTTG 377492 37 100.0 35 ..................................... TTGTACAACTAAAGTCACCTTTTTCCCCATAATAC 377564 37 100.0 34 ..................................... GTTAAACCGCGACGAGATTCGTTGTTTAAGGATT 377635 37 100.0 34 ..................................... AAAACGCCCGCTTTAATTAAATTTAAAATCTGTT 377706 37 100.0 35 ..................................... TGTACTCGATCTCTATTGTGTTCGCGTGGAAGTTA 377778 37 100.0 34 ..................................... TATGAAGTCTGCCAATTGAATTACGATAACGCAT 377849 37 100.0 35 ..................................... CAGTTTCATAGTCGTATGCCCAAGCGTAGATAACC 377921 37 100.0 34 ..................................... ATGCTAATCGGGTCTAGTTGCCCCTCGTTTGTTG 377992 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 10 37 100.0 35 GTCTAAAGACACCGCCCTGTTCTAAAGGGATTGAGAC # Left flank : ACAATGAAAGTGAATACTTAGTAATTCGTCTTGGCTATAAAGAAGTTGCTGATAGTAACCCTTATAGCGGACGCTATTTCATTAAAAATGGAAAAAAATGGATCCATAATATTGATGATGAAGAATTAGAAGCCTCTTATCCAAAAAGTTTTGGATATGACGTTGTTTCGTACTACATCTATAACACATCAAAAAACTCGCTATTACATTCTAATGAATTTAAACCATTAATGAAAAAAGTCCATATAAATTAAATTGATACATAAACAAAAAAATTGTTTTGAAAGCAATCCTCAAGATCTAGAAAATAATATACCATCTTGCGTTATAGTAGATTTATTTTTCTCTTTTATATAAAATAGCAACGTCTTTTTTTGCAATGGAAATAAAACAATTGATTAATATTTGTTCAAATCAAGAGTTAACCTCTCTAACAATACATAAAGTTGGGAAGTGTCAGCTTAACATATTAATAAATAAAGGAAAAACATCTCTCTGCG # Right flank : CACTCACTGCTAAAGTGGGGTATGACGTAATTCCTCAATTACGTGCGTTATCGGCACAGAATAAATTACATAAAGGGTTGTGTATTCGCATCGTAAAAACTCCAACGTATAATATGACAAAATACCAGTACTCGTTATTCGATAACGAGGAACCTTGGTTACTATTCTTTCATAAATTGTTTAGTGGGCGAGCAAAACACTACCACTTAACTTGTAACATCGAATATGAAAATAGCAAAACGACGCTTCTGATTAACCCATCTGTTAAACTAATTAACGGTATGATTGAGGAAGGGTATCCCACGTTAATTAGAATGAATGAGACAAAAGTCATTCCCATAATAAAGAAATTTGCTATGGAATTAGGTAAGTATTGTTTAAATACGCAAGGTGTAATCGAAATGCTAACGATAAACACCCATCCTAATTTTAATAAAAATGATGTACGGGAACAATTAGGTAAATTGTTCCCACATGGTAAAATTAATCAAATGGAAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAGACACCGCCCTGTTCTAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 508154-507106 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSW01000001.1 Pasteurella multocida subsp. septica strain NCTC11620, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 508153 28 100.0 32 ............................ AATTTTTCTTAATCTTGCTCTATGTAATTTAA 508093 28 100.0 32 ............................ TCTGTAAATAACGTGATTTTAATTTTTGCTCA 508033 28 100.0 32 ............................ AAATAATGAAAAATCAATAGATGGGCAATCAC 507973 28 100.0 32 ............................ ATTTTTGGAAGTAAAATTAACCCCAGATTTGA 507913 28 100.0 32 ............................ AGAGCACCATTCATAAAAAGGCGGTTTTTTAG 507853 28 100.0 32 ............................ CATTACGCAGCGTGGTCTTGATGTGGCAAACG 507793 28 100.0 32 ............................ GATGTTAGAGATGGTTATGTAGGCTTTCAAAA 507733 28 100.0 32 ............................ CTACTGGCAATATGTGGCGGTGCGTGATAGCC 507673 28 100.0 32 ............................ TAAAATTTAACAAAAAAGAGGTGATTTATGAA 507613 28 100.0 32 ............................ AATTGCCCCCCAACCAACACTTGCCATAAAGC 507553 28 100.0 32 ............................ TCTTTTTAATTAACAAACATCTAATTTACAAG 507493 28 100.0 32 ............................ TACAATGATAAAAATAATAGAATGAAAATATA 507433 28 100.0 32 ............................ AACATCCCCTCGTCTTCTAATGACTGCAATGC 507373 28 100.0 32 ............................ GCTTTGATTGTGAGATCGGTTAAATCGCTTTC 507313 28 100.0 32 ............................ ACGATACCACCGACGCCTGCGCCGATTTTGAT 507253 28 100.0 32 ............................ TGTATAGTACCAAATATTAACGCTCCGTCGTA 507193 28 100.0 32 ............................ ACCAAATGCGCCCCTTTTTGATTTGAATAAAT 507133 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGCAAAAAAGGGGTAGCGGTGTCTTTTGTGGAAGCACATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCGCGTATTATTGAAGGCTTAGCCCCTCGCACCAAAGCCCCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCACAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAACACACCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATTTAGCTTATCAGGTAAAAGCAACCGGCTCAGTTCATTGCCATGTAAGCAGTTTCAATTGACTATTGGTATATTACCTAAACAGTTGGATATGGGGATAAGTCTATTAGCTTATATCGTGTTTAACGATAAAAGTGCTGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCCGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCACTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTGTCGGCACGCTGTTTCTCTTGAGGATTTGACCAAGGTAAATGAATTTGGATACCTTGTACGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //