Array 1 1-1491 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSQ01000009.1 Salmonella enterica strain CVM 43825 43825_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 28 96.6 32 -............................ CAACAGCGTCCCGTATTCTGTATCGTTGACGG 61 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 122 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 183 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 244 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 305 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 366 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 427 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 488 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 549 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 610 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 671 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 732 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 793 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 854 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 915 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 976 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 1037 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 1098 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 1159 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 1220 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 1281 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 1342 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 1403 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1464 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17751-18573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSQ01000009.1 Salmonella enterica strain CVM 43825 43825_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17751 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 17812 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 17873 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 17934 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 17995 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 18056 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 18117 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 18178 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 18239 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 18300 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 18361 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 18422 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 18483 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 18544 29 96.6 0 ............T................ | A [18571] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //