Array 1 281517-282595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029322.1 Pasteurella multocida strain 14424 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================== ================== 281517 28 100.0 32 ............................ ACTTCCGATTGCTAACCAAAAATTATCATCAC 281577 28 100.0 32 ............................ ACACGATAAAGTGCGGTCGTTTTGGGAGAGAA 281637 28 100.0 32 ............................ ATCAATGAGTATACCTGCCCGGAAGCCCGCTT 281697 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 281757 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 281818 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 281878 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 281938 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 281998 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 282058 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 282118 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 282178 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 282238 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 282298 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 282358 28 100.0 62 ............................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 282448 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 282508 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 282568 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ============================================================== ================== 18 28 99.8 34 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1500114-1496486 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029322.1 Pasteurella multocida strain 14424 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1500113 28 100.0 32 ............................ ACTCTATTTTGACATTAACGACAGCTCGACTG 1500053 28 100.0 32 ............................ TACCACTTGTCCGTCTGCCTCATTCTCTGGTT 1499993 28 100.0 32 ............................ GCCAACTATTAGAGGTTGGTGGGAAAATTGAG 1499933 28 100.0 32 ............................ TTGATAGCTGATTTGGTGCGAGCCCTTACAAA 1499873 28 100.0 32 ............................ AAGTACAAATTAAGTACATGGAGAAGACTAAT 1499813 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 1499753 28 100.0 32 ............................ TCATTTCTAAAGCTCTCTAGAACGTTATTGTT 1499693 28 100.0 32 ............................ TTAGCAAAGAAAAAGCCACCATCTATTAAAAT 1499633 28 100.0 32 ............................ TCCGCACGATCGTTTAGCGCATTAACATATTC 1499573 28 100.0 32 ............................ GATAAGTATCAAGAACTTTACAAGAAGCTCTT 1499513 28 100.0 32 ............................ AGCGAATATTTCTCGCTTTTCAGTTAATTTTG 1499453 28 100.0 32 ............................ TTGCAGACGAAAACGTAAATCTTGCAGAGAAA 1499393 28 100.0 32 ............................ CAAAGAAGTTAAAGAACAAATCTGGGAAACCA 1499333 28 100.0 32 ............................ CTCTGCTACTGCAACAACACGATAAAGCTCAG 1499273 28 100.0 32 ............................ TTCGCCAAACAAGCGAATTTCGCCGCTTGTTG 1499213 28 100.0 32 ............................ GCTACAAATGCCGGTTGAAACTGTTAAATCAG 1499153 28 100.0 32 ............................ GTATGCCATCTCTAATTGTTGCTCAGGAAATA 1499093 28 100.0 32 ............................ TTAGAAGAAGTTATGGAGATAAAAGAGCAAGA 1499033 28 100.0 32 ............................ TTGATGATGCCAATTTATGAATATTTGAAAAA 1498973 28 100.0 32 ............................ TTAGAAGAAGTTATGGAGATAAAAGAGCAAGA 1498913 28 100.0 32 ............................ TGTTCGAGTAGATGAATTAATTCAGTATTACC 1498853 28 100.0 33 ............................ CTTCAGATTTTTTTGATATGATCATTATTGATG 1498792 28 100.0 32 ............................ TGGAGTAATAATTAGAACTCTACCATTACTGA 1498732 28 100.0 32 ............................ TTTCTGTTGATTGCACTTTTTACATTGTTTTG 1498672 28 100.0 32 ............................ GTATGGGGAAATTACAATCTACAGATTGGAAA 1498612 28 100.0 32 ............................ TTCCTTTTCCAATGCGCTAAGGCGCATATAGC 1498552 28 100.0 32 ............................ ATATCTTTGGGGTCTTACCGCTACTCGAAATG 1498492 28 100.0 32 ............................ ACAAGGCGACGATATCATGAAAGGTTGTCTTA 1498432 28 100.0 32 ............................ AACGGCTCACCTTGGGGAACCACCTGAAAAAC 1498372 28 100.0 32 ............................ GATATCAACAAGTTGTTCACCTTTATAGCCAA 1498312 28 100.0 32 ............................ TTGACCTCTGTTGAATAGATTTCATGATAGAT 1498252 28 100.0 32 ............................ AATATCCAAGATGCAGAATTCACAGATTTAAA 1498192 28 100.0 32 ............................ AGTTACAACCTTGCACAAAGTTCAGAGAAGAT 1498132 28 100.0 32 ............................ TTTAGTTGCAAATAAATCATAACATAGTTTTT 1498072 28 100.0 32 ............................ ACAACAAAACGAGATACACATCTCAACGCTCT 1498012 28 100.0 32 ............................ AATTACATTTTTCTGCAATTTTTAATCTCTTA 1497952 28 100.0 32 ............................ ATACTAAAACCCCACCTCAAAGAAGAATTTAA 1497892 28 100.0 32 ............................ ATTACTTCTTAAATATCAGCAAGCACAAATAC 1497832 28 100.0 32 ............................ AAGAGCATAAGCTTGTGGTGAAGAGAGTTGAG 1497772 28 100.0 32 ............................ TGGGCATAGTATGTATCCAGTTTTAAAAGATT 1497712 28 100.0 32 ............................ GTGAGAATCGCTTGTTTGCGGTTCAGAAAAGG 1497652 28 100.0 32 ............................ AATAGAAAAAGCAACTTTATCTTTTCCACCAG 1497592 28 100.0 32 ............................ CAGCTTGACGGCATAGTTCATCGATATAGTCT 1497532 28 100.0 32 ............................ ACCGTAGGAGCGGTGGTCTTTAACAAAGTTAA 1497472 28 100.0 32 ............................ TTTACGTACTAATAATTCTCGGTAGGCATAAG 1497412 28 100.0 32 ............................ GAACGACGCACGACCGTTTGGGGCGCGTGAAG 1497352 28 100.0 32 ............................ TTGCACCGCGCCGATCAGCTTGTTGAACTGTT 1497292 28 100.0 32 ............................ AGCAGTTACGCCCCTCCCACATAGTTTTTAAT 1497232 28 100.0 32 ............................ GAAAGAAAGTGTTTTATTGGGCGCAATTCAAC 1497172 28 100.0 32 ............................ TAACAATCACCGCACTTTGAAAGTGCGGTGCT 1497112 28 100.0 32 ............................ AAGAGCATAAGCTTGCGGTGGAGAGAGTGGCG 1497052 28 100.0 32 ............................ TATTCCAGTCAGTATGAACGACTTCATAAAAC 1496992 28 100.0 32 ............................ GCATTAGCGAGGGATGAAAATCGATTTTCTAC 1496932 28 100.0 32 ............................ ACATGACCAAATTAATAAAATTGTTGTGCGAT 1496872 28 100.0 32 ............................ GCTTAGGAGTGGAATTGTTTGATGAAAACAAA 1496812 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1496752 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1496692 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1496632 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1496572 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1496512 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 61 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //