Array 1 220290-218674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMV01000010.1 Salmonella enterica subsp. enterica serovar Newport str. CVM18005 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 220289 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 220228 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 220167 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 220106 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 220045 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 219984 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 219923 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 219862 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 219801 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 219740 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 219679 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 219618 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 219557 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 219496 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 219435 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 219374 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 219313 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 219252 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 219191 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 219130 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 219069 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 219008 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 218947 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 218886 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 218825 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 218764 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 218703 29 100.0 0 ............................. | A [218676] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 238145-236959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAMV01000010.1 Salmonella enterica subsp. enterica serovar Newport str. CVM18005 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238144 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 238083 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 238022 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 237961 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 237900 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 237839 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 237778 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 237717 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 237656 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 237595 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 237534 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 237473 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 237412 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 237351 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 237290 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 237229 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 237168 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 237107 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 237046 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 236986 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //