Array 1 35569-34524 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQMZ01000225.1 Escherichia coli strain EEPERB98 NODE_1040_length_60955_cov_38.509193, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 35568 29 93.1 32 NN........................... CATCTATTTATCTCGCCGCGATTGGCGATAAC 35507 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 35446 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 35384 29 100.0 40 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTNNNNNNNNN 35315 29 96.6 32 N............................ TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 35254 29 100.0 41 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAANNNNNNNNN 35184 29 96.6 32 N............................ CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 35123 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 35062 29 100.0 40 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTNNNNNNNNNNG 34993 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 34932 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 34871 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 34810 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 34749 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 34688 29 100.0 39 ............................. CCTTGATCGGATTCCAGAAACGAACCACTANNNNNNNNN 34620 29 96.6 39 N............................ TCGTTTAGTGTGGAATTTGGCGACGCGGAGNNNNNNNNN 34552 29 93.1 0 NA........................... | ========== ====== ====== ====== ============================= ========================================= ================== 17 29 98.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGTNNNNNNNN # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77420-78006 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQMZ01000248.1 Escherichia coli strain EEPERB98 NODE_1836_length_78410_cov_38.967350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 77420 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 77481 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 77542 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 77603 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 77664 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 77725 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 77786 29 100.0 41 ............................. NNNNNNNNNNGTTGGGGCGGCGCAATAACGAGACGATACGC 77856 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 77917 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 77978 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ========================================= ================== 10 29 99.3 33 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : NNNNNNNNNGGAATGCATTCTGAAGGTTTGCTGTATATGAGTTCCCCGCGCCAGCGGGGATAAACCACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATGGAAGGTGCGAACAAGTCCCTGATAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //