Array 1 1469-4410 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPJL01000007.1 Paracoccus lutimaris strain CECT 8525 Ga0244622_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1469 36 100.0 30 .................................... GATATAGGTATTCCCGTAGAGTTGCTGCTC 1535 36 100.0 30 .................................... TGCGGCTGATATCGAACCCGCAGTTCGTTT 1601 36 100.0 30 .................................... GCCGTCACATAATCGCCGGCGATGAAGGAC 1667 36 100.0 30 .................................... TCGCCGCCAGTCACGGTGTTGGTGATATCG 1733 36 100.0 31 .................................... AGAGTTCAGGGGCGCGCTCGCACTGCCTGTG 1800 36 100.0 30 .................................... ATCAACCGCGCGACATCAGCGATAAGCTCC 1866 36 100.0 31 .................................... CGCAGCGGTATCCTGTTCGGCCCGTTGCGCT 1933 36 100.0 30 .................................... GGAATGTGTGGTGAGAGCCTGACTGGCGTC 1999 36 100.0 30 .................................... CTGTAGTCAGCGCGCCAGTCGGGATCGTCT 2065 36 100.0 30 .................................... TTTGCACGGGTCGCCCTTTGTTCATGATCA 2131 36 100.0 30 .................................... TGCACCCGACCGGCAACGATATCACGTCGA 2197 36 100.0 30 .................................... GAGGGTGGAATGAGGCAGATCAGCAACCCG 2263 36 100.0 30 .................................... CATCTCGGCCATTTCGTGCGCGTCATCATG 2329 36 100.0 30 .................................... ACCGCGTCTTGCGAGGCCGAGATGATCCAG 2395 36 100.0 30 .................................... TGACGCCCCCGTGTCGTTTTCTCTGACGCC 2461 36 100.0 31 .................................... TTTCACGGCCAACGGATCATCCTCCGCCACA 2528 36 100.0 30 .................................... AGCATCGCGCTGCTGATCGCCGCCCACACA 2594 36 100.0 30 .................................... ATGCCCGGCTGGCAAGGTATCCTGGAAGAT 2660 36 100.0 30 .................................... TTCGTTCGCCTGCGCTTGGGCAGCATTGAC 2726 36 100.0 30 .................................... TGGCGATATCATCGAGGCCGTATACCTCGT 2792 36 100.0 30 .................................... GGCGAACATGGGCTTTGGCGCCCCGAAGAT 2858 36 100.0 30 .................................... GAAACTGTCCATCATGCCGGATTCCATCGG 2924 36 100.0 30 .................................... TTCACATGGGCGTTCAGGCGGTCGATCACC 2990 36 100.0 30 .................................... AAAAGATCGATCAACCAGCGCATCAGAACT 3056 36 100.0 30 .................................... AGCAGGGTCTGCCTGCTGTGTTCCGCCCAT 3122 36 100.0 30 .................................... AGCAGGGTCTGCCTGCTGTGTTCCGCCCAT 3188 36 100.0 30 .................................... AGCAGGGTCTGCCTGCTGTGTTCCGCCCAT 3254 36 100.0 30 .................................... GTTGAAGGCGTGCGCAACGAAAGCTGGCGC 3320 36 100.0 30 .................................... CGGTTTCGATGGGTAACGCCTTCGCCGGTG 3386 36 100.0 30 .................................... GACGATTGCATTGCCGTAGCCCCGCAGGAG 3452 36 100.0 30 .................................... GACGATTGCATTGCCGTAGCCCCGCAGGAG 3518 36 100.0 30 .................................... GACGATTGCATTGCCGTAGCCCCGCAGGAG 3584 36 100.0 30 .................................... CCCAGCCAAGAGCGTGACCCTCATGGCTTG 3650 36 100.0 30 .................................... TGAACCCGACCACTGCGCCCGCATCTGGCG 3716 36 100.0 30 .................................... TTCAGCATTTGGCCGGGCGCAAAGACCGCC 3782 36 100.0 30 .................................... GTGAGCTGGACATACCCGCGGCCGAGCCAG 3848 36 100.0 30 .................................... CGACCATAGTAGCGCCAGTTGTACTGTTTG 3914 36 100.0 30 .................................... ACCGCCCTGCGCACCGTGGACGCCGCACGG 3980 36 100.0 30 .................................... GTCACCGACGAACTCGTCAACCTGCTCCCT 4046 36 100.0 30 .................................... TATGCCGTGATCCGCGCGATCTACGGCAGC 4112 36 100.0 30 .................................... TGCAGCGCCCGAACCAATGCGGCAGGGTCG 4178 36 100.0 30 .................................... CCTTACCCTTGCCATCAGGACGCAGGAACG 4244 36 100.0 30 .................................... AACATTTGCCAACACATCCGCGAAGCTCTC 4310 36 100.0 29 .................................... TAAAACAAGTATCTATCAAACTAGGCACA 4375 36 97.2 0 ..........................G......... | ========== ====== ====== ====== ==================================== =============================== ================== 45 36 99.9 30 ATCCTAGCAGAAGAAGCGGCGTGGCCAAGCCCGGAC # Left flank : TCAATCCTGCGAAAGCGGCAAATTGCGCCTCGCCTTTCCGGACCGGCCGATCCCCCTAGCCTCGGAAAATCACGGCGATGGGTGATAAAGGCTTCAAACAACTCTCAGGATACAGAATCATGTGGGTATGGGTACTTTTCGATCTGCCGGTGCTGACCAGTGCCGAACGCAAGCGTGCAACGCGATTTCGCAACGATCTGTTGGACCTTGGCTTTGAAATGGTTCAGTTCTCGGTATATCTTCGGCACGCATGGAGCAAAGAAAAGGCTGAGAGCTATGCAAGACAGGTTGGCAACCTCGTCCCGGACCCCGGCCATGTGCAGGTGCTGTTCTTCACGGACAAGCAATATGCCCTCAGTCAGGTCTTTAACGGCAAGCGAAGATCGAAAACGCCAGCAGAAAAACCGGCCCAACTCGTGCTGTTTTGACCAGGCAGAGGACGTTTTTATGCGGAAAAAGTCAGTAAAAATCCCCGCGCAACAAGAGGTTGCGCGGGGCTT # Right flank : CGAGAATTGCTGTGAAACCGCCCCCCCCCCCGGCTGCGCGCATCCAAAAAGTAGGTTTGGATTTCAGGACCGGCTGCACTGGAAATGGTATTACGAAACGACCAATTCGAAATTCGAACTTTTACGATAAATATCAATAACTTATAGAAATTCACCAGAACATCGCAGGCAACAGGTCCGGAGAATATCCACCCAGAGAGACTACTTTCGGGCCTCCTAGCAACGAGGCCGGTTAACATCCCCCCCGCATAACCCTCGAAAACAACGGAAAAATCCGGCTGCAGCCGGATCGGGAGAACGCTTTCGCGAGGGCAAGTGGCGGAGGGGATGGGCCTGATATCCAACCTTCTCCATGTCGGAAACGAGTTGGAGAGTCGTCGCGTTCAACCGGCGCGCCGCGGGATCTTCCTGCGGTAGGCATGCCGTTGGACGGGAGCAACGATGCTGGCGGCCGTCGCGACCTGATCTCGTGACGTTGGCTTGGCTTTGCCGCGCCTGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCTAGCAGAAGAAGCGGCGTGGCCAAGCCCGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.90,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 14181-18662 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPJL01000035.1 Paracoccus lutimaris strain CECT 8525 Ga0244622_135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14181 29 100.0 32 ............................. CCCAGACAGGCACGAATGCTGCGGCGATCACT 14242 29 100.0 32 ............................. ACGCCGGTTCGCATGGCAACTCTGATCCAGGC 14303 29 100.0 32 ............................. AAAAAATCGCCCTTCGATCCGTATGCCATCGG 14364 29 100.0 32 ............................. GCTCTCAACACTGATCCTGTCCGGGCTGGCAA 14425 29 100.0 32 ............................. TCGATGCGCTGGCGGACGGATTCATTGGCGGC 14486 29 100.0 32 ............................. CCTCCGCATTGGATTGACCTGCTACCACCACA 14547 29 100.0 32 ............................. TTTCAATATTCCTTCGCCTGCACCGAAGAGTC 14608 29 100.0 31 ............................. GCGACCCGATCCATCGGCAAGTTCGTAGGTC C [14633] 14669 29 100.0 32 ............................. GGACGATTGCCACGACCTCCGGCGTCAACAAT 14730 29 100.0 32 ............................. ATCGTGGCGTATGGCGGTGCCGGTGCAATCTC 14791 29 100.0 32 ............................. GGCTGGAAGTCGGTCACGATGGCGTTGAATCG 14852 29 100.0 32 ............................. GCTCGACCTGGGACGGCAAAGGCTGCTGGGCC 14913 29 100.0 32 ............................. ATGCGGATCTATCTCTCGGCGATCCCGATGCT 14974 29 100.0 32 ............................. GCATCGTAATGCGCATCAGCCGCGCGCATGTT 15035 29 100.0 32 ............................. GCATAACCGACTCTGAGTGGCATACTGCCGCT 15096 29 100.0 32 ............................. CGACCCGTGCGCGATACTCGATCCGGCGCCCC 15157 29 100.0 31 ............................. GCGTGGCCCTGATCTTTGTGACGCAAAGCCC G [15184] 15218 29 100.0 30 ............................. GGATACAACGCCGCGCTTTTGCATGGCAAA GA [15245] 15279 29 100.0 31 ............................. ACCTCGGCTGAGCGCCCGCCATACGCCTCCA A [15306] 15340 29 100.0 32 ............................. GCTCTGGCGCGAGCCTCGCACTCAGCGGCTTC 15401 29 100.0 32 ............................. GAACTCTGTGATGAACCTGCGCGTGAAAGTGA 15462 29 100.0 32 ............................. CGTAACTACCGCCGCAGCAGTTGCCGACGCCG 15523 29 100.0 32 ............................. CCGCACGATGTCGGTCAGCGTCTTCTTGCGCT 15584 29 100.0 32 ............................. GCGCTTCTCGATCTGGCGCGGCTGCTTGCCGA 15645 29 100.0 32 ............................. GTCGAGGCTGCATATAAGGCCGAACAGGCATT 15706 29 100.0 32 ............................. TCCTAGAACCGTCATTGAATAAAGAAGACCCC 15767 29 100.0 32 ............................. CCGCCCATCAGGACGGCCGGATTGCAGCAATG 15828 29 100.0 33 ............................. CAGTGCGCGCCGCACATTGGGATCGACATTGGC 15890 29 100.0 32 ............................. TCCGGGCGCCCGCTGCTGATGGACGAGGCGCA 15951 29 100.0 32 ............................. GATCTGCACGGCTGGCGCGTGGCGCTGAACCC 16012 29 100.0 32 ............................. ACGGCATCAGGATGGTCTTTGGACAGAACTGG 16073 29 100.0 32 ............................. ACGTCCGAGCTGTCCGCCAACAGCCGCCTGCA 16134 29 100.0 32 ............................. GTTTGGCATGTCGCCGAAAGAGGCCGAGGCTC 16195 29 100.0 32 ............................. GTCTATACCGACACGATCAAGACCCCGGGCGA 16256 29 100.0 31 ............................. GCACGCCCGGATTGCCGCGGAGCGCCGCATC C [16284] 16317 29 100.0 30 ............................. GCAAACGATCGAAGCGAGGTGAGCGATGCT CT [16343] 16378 29 100.0 32 ............................. GGGTTAGACAGCGGAGCCGCCGCGCCCCGATA 16439 29 100.0 32 ............................. AGATGGACGCCGAGGACATGACCACGGTGGCT 16500 29 100.0 32 ............................. CTCAGGCGAGACAGGCGTGGCGGCATCATTTC 16561 29 100.0 32 ............................. GCGCGCACCAAGCGCGTCGGATCGGCTGAACT 16622 29 100.0 32 ............................. TAGGCGCGCACCTCCATGAGCGGATCGGCGGC 16683 29 100.0 31 ............................. TCAACGTGGGCGATGGATGGGCCGCACAGAT A [16711] 16744 29 100.0 32 ............................. ATGACCGCGCCCGTCCAGCGGGATTTGATCTT 16805 29 100.0 32 ............................. GTCCATCGCATATTCTATGGTCTCGCCGTTCC 16866 29 100.0 32 ............................. GTCGTCCCCCTTGCGAGGTGGTAGTCTCGGAA 16927 29 100.0 32 ............................. CCGCGCACCGCCTCGGGCTGGCCCGTGGGGTA 16988 29 100.0 32 ............................. GTTGGCGATGGCGTCGTCCAAGGAGGGCACGT 17049 29 100.0 32 ............................. CTGACCGTCGACATGGGGTCCGACGGCATGAG 17110 29 100.0 32 ............................. GCGCTCGCTGGCGGCAGTTTGGCGGCGGTCAC 17171 29 100.0 32 ............................. TCACCCACGGCAACGGCTACGGCTACGGCAAC 17232 29 100.0 32 ............................. GCCGCGCTGAGCTATCTCGCCAACGTCGATCC 17293 29 100.0 32 ............................. GCTCGGTAGGTCATACGCGTTCTCCCAACACC 17354 29 100.0 32 ............................. TCAGAAAAAGCAATAATTTGACGGTGTGGGCG 17415 29 100.0 32 ............................. ACCTTTATGACCGGATCGCGCGCCTGAAATAT 17476 29 100.0 31 ............................. CAGACCCTGCCGGCGACCTATACCATGCTGC 17536 29 100.0 32 ............................. CCCGGTTGCCGCAGGAATGCGCCGCCTGCTGG 17597 29 100.0 32 ............................. GTAAATCTGGCCCCAGAGATCGTAGAGACCGT 17658 29 100.0 32 ............................. GGGTTGCGGGGGCTGGAAGGCAGGCCGGGCCG 17719 29 100.0 32 ............................. ACCGTCTCTGGCATCGAGGCTGCGGAATGACC 17780 29 100.0 32 ............................. AAACTGTGGGCCATGCTGCGCGACGTGGCGCA 17841 29 100.0 32 ............................. CCGCTGGTCGAATACCGCGAGATGGAGACGCT 17902 29 100.0 32 ............................. CGGGCTGGTCGTTTCCGAGGATTGGTAGGGCT 17963 29 100.0 33 ............................. CTGGTCGCGGTTTGTCGCGACATGTGCGCAGAC 18025 29 100.0 32 ............................. GGCCAGCCATTGCATCCATGATGCGCGGCACT 18086 29 100.0 32 ............................. ATGATGTGATGATGCACTGGGCCGCAGTAAGC 18147 29 100.0 32 ............................. CCGATCACGCCGACGATGATTTCCGCGACCTG 18208 29 100.0 32 ............................. CCGCCGCCCGTCGATGTGGTGGCATCGGTGAC 18269 29 100.0 32 ............................. ACCGCAAGGCACCACATTGGACAGGATCGACA 18330 29 100.0 32 ............................. ATGGCCGACGATGGCAGCGTCCTGATCCCGGT 18391 29 100.0 32 ............................. CCGCCCGCCGTCCGCTGGACCGCAGCCGTGCC 18452 29 100.0 30 ............................. GCATGGGGGAGCATTGGACGATGTGGTGAA G [18479] 18512 29 100.0 32 ............................. ATCGAGCCGACGATCCCAGACAGCCACCCACC 18573 29 100.0 32 ............................. GCCGTGACCGGTGTCGGCTGGTAGTTATGCGC 18634 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 74 29 100.0 32 CTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : GGACGTATTCCGCAAATCCGGCCTGCTGGCCAGGATCATTCCACGCATTGAGGAGATTCTGGAAGCCGGCGAACTGCCACGTCCCCAGCCGCCCGCCGATGCGATTGGCCCAGCGTTTCCCGACGACCAGTCCGGCGACGAGGGGCATCGTTGATGATCGTGATCGTGGTGGCGAATGCTCCGCCTCGATTGCGCGGTCGCCTGGCGGCTTGGCTGGTCGAAGTTCGCGCGGGCGTCTATGTCGGAGAATATTCGTCCCGCTCGCGAGAGATGATCTGGTCCCACGTGACCGGCGGCATCGAGCAGGGTGACGCGGTAATGATCTGGAGCGCGCCTACAGATCAGGGCTATGCTTTCGAGACGGCCGGCCGCAATCGCCGCATGCCTGTCGATTTCGATGGGCTGAAGCTCGTCTCGTTCTTTCCCCGCAACGATGCCGGATAGTTGGTAGATTCCTCAGTCTTGCTGGAATATCGGTAGATCAATAGTTTCCACGAAGT # Right flank : GCCACCAAAGAGCGTCTCGCCGATCAGGACTATCCGGCCGCTCTAGATCGTAAGCTTGGGCTGATAGTGGTGCTCCATACGAATGGCCGCTAGTGCAACGTTTCTGCAGTCGCTCTGCCGCAACGCGGCTGACAGCTTTCCGCCTTTTCGACGCTTTCCCTCTGGCCTCGACGGGATTATTCGGTGCAGATAGTGTCATGAATCATTTCCTTTTGACCGCAATGAAAACAAATAATTCTTGACATGAACACCTTGCGCGCAACGCGTCGCTCGTGTGGACTGACACAAGCCTCAGTCGCAGCCTCGGCCGGGATCAGCCTGCCGACGCTGCGGGCGCTTGAGCGGGGTGAGGGTGGTGTGCGGGCGTTGGCCGCGGTGATGGCGGTGCTGGATCTGCGCTGGGGCTGGGCGCCGGACCGGGTGCAGGCGGCGCGGGCTCTGGCCGATCGGCGGCGGGCGCGGGGGCTGAGCCAGGCGCAACTGGCCAATCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //