Array 1 283719-280252 **** Predicted by CRISPRDetect 2.4 *** >NC_014910.1 Alicycliphilus denitrificans BC, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 283718 36 86.1 30 T...AAAT............................ GGTGCAGGGCGCGCCCTGCTGGGGGTCCCG 283652 36 100.0 30 .................................... CTTGCCGGCATGCACCAGCAGCTCGCCCCG 283586 36 100.0 30 .................................... CCACGCCGCGAGCGGGACCGAGATCATCCA 283520 36 100.0 30 .................................... CACAACGAAGACGAGGCAGCCCGATTCGTG 283454 36 100.0 29 .................................... CCGCAAGCTGGACAAGGTGAAGTCCCGGG 283389 36 100.0 30 .................................... TCGGTGCGGCCCGCTGGTTAGTGTGCAGGA 283323 36 100.0 30 .................................... GTTCAGAGGCCATGCAAGCGGGTCAATCAA 283257 36 100.0 30 .................................... GGTGGGCAGCGAGTCCCTGCGCGAGGCCGT 283191 36 100.0 30 .................................... CAAGAGGGTATTTATCAAGCGTGTCACTGA 283125 36 100.0 30 .................................... CTCGCCCCCGTTCTTCCGCCATCCAGCAGA 283059 36 100.0 29 .................................... CAGATCGACGTGCAGACCGGAGACACCGT 282994 36 100.0 30 .................................... TCGCGCCAGCAATGCAGGGTCATAGTCATA 282928 36 100.0 30 .................................... CTGAACTTCCCGCTTGCCATAGAAGGCCGA 282862 36 100.0 30 .................................... TCCTTGGCCGACGTGCATGCTTATCTGTCG 282796 36 100.0 30 .................................... TTCCTCAGGTTGCGCACCATCTGGCGGCGC 282730 36 100.0 31 .................................... CTCATGACTAGGTTTTATCAAGCCGGCTGCT 282663 36 100.0 30 .................................... GCAAGCCGGCGAGATTGCCCGCCTGAATAT 282597 36 100.0 30 .................................... TCGCGCCAGCAATGCAGGGTCATAGTCATA 282531 36 100.0 30 .................................... AAGAATTACGATGACTTCAGGAATCGAGCT 282465 36 100.0 30 .................................... TCGACTTCCTCTCGCATGCGCTGCAGGACA 282399 36 100.0 30 .................................... CTCAATGCCGTTGATGATGGTGTTGGAGCC 282333 36 100.0 30 .................................... GGCGTCGCGCGGCTCCGCGTGGCCGCACAA 282267 36 100.0 30 .................................... GCGCTGCATTCGTCATAGCCAGTCTGGCCG 282201 36 100.0 30 .................................... TCGACTTCCTCTCGCATGCGCTGCAGGACA 282135 36 100.0 30 .................................... CTCAATGCCGTTGATGATGGTGTTGGAGCC 282069 36 100.0 30 .................................... GCGGCGTGCCAACCTACAAGATGCCGACCT 282003 36 100.0 30 .................................... CGTTCAGCAGGCCATATGTACGATTGTCGC 281937 36 100.0 30 .................................... GGCACTGTCTGGAGGCAGCGCATCCATGCG 281871 36 100.0 30 .................................... GGGGAAATGGAATGCTTGTTGGGTATGCCA 281805 36 100.0 30 .................................... CTTTGTGCCATTGATGGCCCGCTAGTGTGT 281739 36 100.0 30 .................................... CACCACGAAGGGTTGCATTTACCTGCTCCT 281673 36 100.0 30 .................................... GTCCGACCACTCCAACCCCTCGTTCAATAT 281607 36 100.0 30 .................................... CGTGTATTGCCGCTGCCGGTTGATGGTGGC 281541 36 100.0 30 .................................... AAGATGAGCGATGGCTTGCCGGTGCCTATC 281475 36 100.0 30 .................................... TGGCCTGCAAGCATTCGCCAAGGCGCCGGG 281409 36 100.0 30 .................................... TCTCCGTGGCGGCGGCACTCAGGCCCATGG 281343 36 100.0 30 .................................... CGGTGATCACTGCGTCCTTCATTCCCTTGG 281277 36 100.0 30 .................................... CACATCGGCAACCGCCATCACGTCGTCGCC 281211 36 100.0 30 .................................... CTCTTGCGGTAGTTCCGGCGATGGGTGCGG 281145 36 100.0 30 .................................... GCGGTGGTGCGCGCGGTGCTAGTGGCGATA 281079 36 100.0 30 .................................... CTGGTCGGGCGGCGCCGGCACTAACGCAGC 281013 36 100.0 30 .................................... CATCGCGCGGTGAACCCGGCATAGGCTGGG 280947 36 100.0 30 .................................... CTGACTGCTGATTTCTTATGCGGTCTTCCA 280881 36 100.0 30 .................................... AAGGCGCGCGGAGCTGATGACGAGAATCTC 280815 36 100.0 30 .................................... TGGGTACCCCTTACCGAACACATACCCGCA 280749 36 100.0 30 .................................... CGAAGCGTTGGAGCGCTGCATCCGGCACAT 280683 36 100.0 30 .................................... CATGGGCAGGTTCACCAGCTCGTCGCCGAT 280617 36 100.0 30 .................................... TCATCTGCTTGGCGAACCGCGCCACCGATG 280551 36 100.0 30 .................................... CCTGCTGAACGGGGTAGTGGGCGTGGTCAC 280485 36 100.0 30 .................................... GCTGCGGAAGACAGTGCGCGGATGTCGCAT 280419 36 100.0 30 .................................... CCGCCAGGGTCGTCCTCGCTGCGCTGCGGA 280353 36 100.0 30 .................................... TGCGCCCCACGATCACCCACTCATGGCGGG 280287 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 53 36 99.7 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Left flank : CCGACCCCCTGGCCCGCCTGCGCGAGCTCTACCGCGACCGCGACCCGCTGTACCGCGAGACCGCGCGCTACGTCATCGAGACCGGCCGGCCCACGGTGAACACGCTGGTCAACATGGCCATGATGCAGCTGGAGATGGCACCCGGCAAGCCAGACCTCAACACGTGAGGTACTTTCCGGCATATTATCTGCCGCGCTGTGCCCAATGTGCGCCAGCGCCAGTTCCACAGGCACGATCAAGATACGGCAAATATGCATCTCACAGGCGTGCTGCAGTGCCTGCCGGTGGCGACCACACTGGCGCGCGTGGGAAAGTCGTGTATGTGAATGGGTCCGACAATGCAAGGTTCATTGCACAGCCTTTGGAAATTTCAGTAAATACATTTACAACCTATAATTTTAACAATCATACCCTCAATACCAACGCCATCCCCAGGCGAATAAACTGCAAATATTTGAATCATTCAACTCCCTATTCACAGCTCGACATAGATCCAAACC # Right flank : TGCGCAGGACAAAGCCACGCCTGTTTTTGAGATTGAGTCCCGAGACTAGCATGGAACCACGCTGGAACCCGCAGAGCCTTGCTGCGCTTGGTTTTCCAAGAGGCTAGTCCCGTTTAGCCTTACGCCTAGACCAGACCGATTGCGGCAGACATTCCGATGCCGTGGCTCCTGGCTGGTTCCTGCGTTCGATCCCGAACTAGGAGGCGTCATGGCCAAGATCAAACTCACCAAATCCGCTGTCGATACGGCAGAAGTCACCGGCAAGGACTACGAACTGCGGGACACCATTGTCCCCGGCTTTCTCTGCAAAGTCACCGCCCACGGCCGCAAGGTCTTCATGCTCCAGTACCGCACGAACTGGGGCGAGCGCCGCAAGCCGAAGATCGGCCAGTTCGGCGAACTGACCGTCGAGCAGGCGCGGTCGATCGCACAGGACTGGCTGGCCGACGTGCGCAAGGGCGACGACCCCAGCGCTGCCAAGCTGGCCGCGCGCATGGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //