Array 1 13529-11670 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGF01000010.1 Escherichia coli strain 636 BN4_636_1_(paired)_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13528 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 13467 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 13406 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 13345 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 13284 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 13223 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 13162 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 13101 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 13040 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 12979 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 12918 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 12857 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 12796 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 12735 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 12674 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 12613 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 12552 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 12491 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 12430 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 12369 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 12308 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 12247 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 12186 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 12125 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 12064 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 12003 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 11942 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 11881 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 11820 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 11759 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 11698 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40477-39228 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOGF01000010.1 Escherichia coli strain 636 BN4_636_1_(paired)_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40476 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 40415 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 40354 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 40293 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 40232 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 40171 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 40110 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 40049 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 39988 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 39927 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 39866 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 39805 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 39744 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 39683 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 39622 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 39561 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 39500 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 39439 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 39378 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 39317 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 39256 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //