Array 1 19877-18579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGK010000039.1 Megasphaera hominis strain NSJ-59 N28_ctg039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 19876 32 100.0 35 ................................ TCGTAGCCCGTAATTCGCTCTGTAAGCTCTTTTTT 19809 32 100.0 34 ................................ ATAATTATCGCTCCTTTTTGTTTTTTGTATTTGG 19743 32 100.0 35 ................................ AAACAAGCCGCTGATGCTGGCTGCCTTAGAGGCCA 19676 32 100.0 34 ................................ ATAGTCGCCTTTGTAGCCAGGCAGGATGATTTTG 19610 32 100.0 35 ................................ TATTTGCAGTATGTCTTCATCCTCGCCTACACGGC 19543 32 100.0 33 ................................ TCTCCTTGATGTTGGTTCACACGCTACACCTGA 19478 32 100.0 35 ................................ TTTATTTTCTAGGCCACTCTTTTCCCTGTAAATGG 19411 32 100.0 35 ................................ CGCTGTCTCTTTGCTACGACGTACTTGTGGCTTTC 19344 32 100.0 34 ................................ CAGCGCAACAGACAATAGCAGGTTATCTGGCATT 19278 32 100.0 34 ................................ GTCCCTGGAATCATCTCCGGTAATTTTACATCTG 19212 32 100.0 35 ................................ TCTGTAGACTAGCAGATAATAGTGTAGTCCGGGCT 19145 32 96.9 36 .......T........................ AACGGCTGTGATGATTGCCAGGTCAAATGCCCTTCG 19077 32 100.0 35 ................................ TCACCTTGCATGACGACATTGTAGACGCAAGTGCC 19010 32 100.0 35 ................................ TTATTAACTGGCACAGGCCGCACGCCGGCAGCTGT 18943 32 100.0 35 ................................ ATCATGGTGTTTAAGATGGTGTTGGCTACACCCGT 18876 32 100.0 34 ................................ CTGATCAGGCAGTCAACGATGAACTCATCTATTG 18810 32 100.0 35 ................................ TCCCCGATACCCGTTGTCCACGATACCGACCGAGT 18743 32 100.0 34 ................................ GGTACTCGGATCGCTGGCAAACCAACTGCTTACC 18677 32 96.9 35 ...........T.................... AAGGATCCCTTGGATGTACGGGGCAAAATCATCAA 18610 32 96.9 0 ................G............... | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.5 35 GTCACATCCTTCACGGATGTGTGGATTGAAAT # Left flank : TATATGGCGCAGACGATACCATACCGCATTTCTTTAGCGGCAGACGTGTAGAACGCGGACTATACAGCACTGCTCATGGAAGGTGTTTCAATGCCGATGTAAATGGCGCATTGAACATCCTGCGTAAAAGTAATGTTGTGAGCCTGGAGGCTCTATACACTAGGGGCGACGCGGACACGCCCGTAAGAATAAGGATTGCCTGAGATATCAGGTAGAAACGTAAATACCAACCTTCTTAAATGGATGTGAGATTACATCCTAGAAGCTCCCAATTCAAATGCAGTAGCATTAAGTGGGGGGAGTTCACGTTTGCTTTGAAAAGATTCCCGACAACGCGAAGTGTAATCAAACATAAAATGTATGGCCGCTTCGCGATGCGTCCAGAATCAGGTTTTTAGCATGTTAAGCCTCAAGGATGAGAACAAAAATAAGTTCGGTAAGAACCGGTTCGCGCTACATAGGCTGCGAGCTGAGCAAATATGTGTATTCTTTTTGAGGGT # Right flank : AGCAACAAAAAAAGCGCAGCTTAAGGCCCACAAATGGCTTAAGACTGCGCTTTTTGATTTGGCGGAGCGGGTGGGATTCGAACCCACGAGACCTTTCGGCCTAACTGATTTCGAGTCAGCCCCGTTATGACCACTTCGATACCGCTCCATAGGATACTCAGATATTCTATCATGAATTGTAGCTTATGTCAAATTTTTCCTAGCCCGGTTTCAGCGATTGCATATTGTCATTTTGGGTCTTTTTAGGCTACAATGTGTATATTAGATATATATAAGTCAAGAGTAGAGAGAAAAGATATTCCTTTTTGTGCGAAAGAGAGTGATTTTGATGACACATATTGATTCTAAAAAAGAGTTGTGCCGTATTGGCCGGCGGATGATGGAGAGCGGCTTGGTGGTGGCTTGTGATGGGAATTTGAGTTATCGTCGTGATGACGGGGCTATCGTGATTACGCCGTCCGGTGTGCCTAAGGGCGAGCTCGTGCCGCAGGATTTGCTCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCTTCACGGATGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCACCTCCTACACGGAGGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3796-2455 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGK010000040.1 Megasphaera hominis strain NSJ-59 N28_ctg040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 3795 35 100.0 39 ................................... GGCAACTTTTTTACCTTCTAAAGCCTTATACATTTCTGT 3721 35 100.0 44 ................................... TTCTGGCATGACGGGTATTCCTTCCTGTGTTTCTTCGATAAGTC 3642 35 100.0 42 ................................... TCAAGAGATGTACATAACTGAGTCTTACGTTTTCTACTACGA 3565 35 100.0 44 ................................... TTTACCCTTGCTGTCAAGTACATATTCACCACTTTTTTTATCTT 3486 35 100.0 40 ................................... GTATTATAATGGCAGACGTAACACAACTCGCTCCCGATGT 3411 35 100.0 39 ................................... TAGAGCCGCATTTGGCTATTGCCGATAGCAGATACCGTT 3337 35 100.0 42 ................................... GTACTGTAGGTCCGGCCACTATCGCGCGAGACAAAGACGTCA 3260 35 100.0 42 ................................... TTGAGGTTCAGCGTTACCTTGTTTCGTTCGTCAATAATAAGC 3183 35 100.0 40 ................................... TCATCCATGCCCATGTATTCGCCCATGCTCTTTTTGTAGT 3108 35 100.0 40 ................................... GCCTCGCTGTACATTTGATGCAATTTTGTCATGCTGTCTC 3033 35 100.0 44 ................................... GACCGTGCCACCGGTGAGCGGTTCGCCGTCTTTGATTTTGCGAA 2954 35 100.0 44 ................................... CAATTCCATATATAAGTATTGCTTATAGCAGTAACTTGCTAAGT 2875 35 100.0 43 ................................... AGTTCGGCTGGGTGGTAACTATTCATGAAATGAAACACTAATT 2797 35 97.1 43 ............T...................... TTATTGTTGTAGAGGTCCCAGATGCATCCGGGTTCATATCCCG 2719 35 85.7 43 .........AC.T....T...A............. CCTTATGCAAGGCACGGAGGAAAGAGCGGTATTTGTTATCGCC 2641 34 85.7 41 .A........T.-.G......A............. ATATTATCCCAATTCACTGTATTTGCCTGGTCCTCCCGCAT 2566 35 85.7 42 .........AC.T....T...A............. ATGTTGTTGTCTAAGTAACGATAAGGGTTTTCTCTTTCCATC 2489 35 88.6 0 ............T.G......A..........G.. | ========== ====== ====== ====== =================================== ============================================ ================== 18 35 96.8 42 GTTTCTAAACATCATCCCCGCGAGGGGACGGAAAC # Left flank : CACCACTATTGCCACACGTGCCGTCAATGGCTGGAAGACCACACGTGCGACCTGTGCGGCAAGCTTTTTACTAACGAGTTGAATCATCACGGCAGCCGTACGTTCTGTAATCTGTGCCTGGCCATTATCAAAGACGCAGAAGAAAAACAAACGACCGTACGCCGCGTCGTAGACGAAGAAGACGTGCCATTAGCTGTACGCAGACGATTGGAATGATACATCCCTAATACCTACCTATACTTGGAGGAGGCATATATGTTATAGGAAGAAATGCTACACCATACACAAGGTTCATAACACAAAGGCTTGAAAAAAGCTGGAACTATAGATATACTATACGTAGTGGTGTGCCAGAAAACGCCAAAACAGCGCCGGCCCGCATAAACACTGGCTTCGTGAGCGCTTTCTTAACAAATTAAAGTGCTGTCATGACAGCACTTTCCATCAGCGCCGATAATGGCCTTTTGAACCGCATGAGAATGCGGGTTCCAGGAGATAGG # Right flank : TAACTTTTTTCTTTTGCTATTTCGGCTTCAAATATATTTTATGTTTCTAAACATTGTCCTCCTTCATGCGGCCTTTTTTGCGGCCGCATGAACCGCAATACCCGCACAGGGGTATTGCGCCCCTTAAGGGGACGGAAAATCGAAAGCATAGTACGTACGACAAAAATGCTCCTTCTTCCAGGAGCGTTTTCGTTTAAATGACGATGAAATTTTTTCTGGGACAGGCATCTGTCTCTTTTCTTTGTTACAATAGAAATAAATAATAGTAAAATGATATAATTGAGCCTGACTAGTATTTTTAACGTCAAAAAAGCAGGAATCCAGCTTTGCATCAAGAATTGTTACAGTATAGAAAAATATAAGACCTTATTATAGTTAGGAGGAGTTATATGACACAAGGTGATCAACGTGTATTAGCCAAGGCAGCACTGTTGCATGATATAGGGAAATTAGTGTATCGTGCCAATCAGTTGTCAGGAACTCATTCCCAGAGGGGCGCG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAACATCATCCCCGCGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 7839-9113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGK010000053.1 Megasphaera hominis strain NSJ-59 N28_ctg053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 7839 35 100.0 42 ................................... GAACATGTTCCATCAAAGCTAATGGGTAAGCCTGTCTTGAAT 7916 35 100.0 43 ................................... TTTCTTAAAATCTCATTCTTATTCATACCGTTTCCTCCTTTAA 7994 35 100.0 40 ................................... CGATACTGCAATGTGCCCATGCGGCGAACCTTCTTGCCGT 8069 35 100.0 44 ................................... CCCCATTAACAGCCATCGTCACTCATCACCTTTTTCCCCAGTTC 8148 35 100.0 40 ................................... TCAATGGCTCTGGTGTCAACGTAACGACACGGACGGTCAA 8223 35 100.0 44 ................................... GTGACGAAACGAAAGAAAAAATTGCTAATTATTACGGTATGACG 8302 35 100.0 43 ................................... GGCTTGTCCCTAGGTACAACAATTCATACTGTTCATCGTTGCT 8380 35 100.0 44 ................................... GATGCCGAAAAAGTGTGTATATCCCTCGCTGTCCGTGATACAGG 8459 35 100.0 43 ................................... TGTTGTTACTTGTGTCATTCTAATCACTCCTTTTATAATTCTT 8537 35 100.0 44 ................................... GGCATGCCGTAACATGGAACAATGCTTTTTCAAGTTGTTCAACA 8616 35 100.0 45 ................................... CGGGAAACCAGCTATTGGATTCTTCCCATCTATTGATATTGATTA 8696 35 100.0 43 ................................... CTTCTTCCCATGAGAGAATAAATCTTGTCCAAAGAAACGTTGT 8774 35 100.0 43 ................................... ACGAAATTGTAAAACTGTGGAACGAACAATAACATAGATCAGA 8852 35 100.0 43 ................................... ACAAATACCTTGCACAAAGCATACCGCACAAAAAAACACGGAA 8930 35 97.1 38 ..................T................ TGTTCAACCGTGTGTTTATTGCCACTGATAGCCTGCGA 9003 35 100.0 41 ................................... AAATCATTTTTTCCGAATTAGTCATAATATTTCCTCTCTTT 9079 35 94.3 0 .................................TG | ========== ====== ====== ====== =================================== ============================================= ================== 17 35 99.5 43 GTTTCTAAACATTAGCCCCGCAAGGGGACGGAAAC # Left flank : AATGTATCGTCCTCATTATCTACGATATCGTTGACAACAAACAACGGAATAAGATGGTGAAGTGCCTCGAACGTTATGGCGTACGCGTCCAGAAATCTGCTTTCGAGGCACTCTTAGGACGTAAAAAATATACAAGGCTTATAGAAGAAAGCCAGCGCATTATTGATCCTAGTACAGATTCCTTGCGCATCTACATCTTAGACTCGATCATTAATGTCTATACGTGGGGACTGGGAGAACGAAAAGAAGAGGATTGTGTTATTTTATAAAAAATGCGCCAACCATCTGTTTTTTGACGTGATAATCTTGCCGAAAAACGTGATACCAGGTATACTATACGTAGTGGCATGCCCGAAAATGTTAAAACAGCGCCGGCCCGCATAAACACTGGCCTCGTGAGCATTTTCTTAACAAATTAAAGTGCTGTCATGACAGCATTTTCCATCTGCGCCGATAATGCCCATTTGAGCCGCATAAGAATGCGGGTTTCGGGAGATAGG # Right flank : ATATGCTCCCTTCTAGGTAGACATGAGAAATAATAAAATCTCACTCTACTTGGAAGGGAGCATTTATTATGCATAGAACTAAGGTTTGTGCAGAAGAAAAACTACATACGGTGCTAGATATTCTTGCAGGAAAAGAATCAGTATCTCATGCTGTAGCACGATTGTCAGTAAACAAATCGTCTGTAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAACATTAGCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 86111-85274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGK010000008.1 Megasphaera hominis strain NSJ-59 N28_ctg008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================================================================================================================================================================================================================= ================== 86110 23 100.0 52 ....................... CGGCCCCGTGAAGTATCTTTTGATGACATCATCTACACAGATTTCTAAACAT 86035 23 100.0 52 ....................... CTGTAATTGTACAGGTGCCGGATGGCTTCTTCCTGTGTAAGTTTCTAAACAT 85960 23 100.0 56 ....................... ACTCTTACTACATGAGCGTGCATGCTTCTGAAGTTATCAAGGTCGTTTCTAAACAT 85881 23 100.0 55 ....................... ATGTCTCCATTATAGATAAGGGAACAACCGCCCCAACTGTATTGTTTCTACAATT 85803 23 100.0 249 ....................... TGTACTCTTTCGCCCGCTTTTTCGGCGTCCTCTATTTCTTTCGTTTCTACAATTTATCCCCTTCATGCGTCCTTTTTGCGGCCGCATGAACCGCGATACCCACATTGGCTAACTAATTGAATTTTCTTCAATTAGTTAGTAGTACGGCCGCAATACCCACGTTGGCTAGCTAATTGAATTTCCTTCAATTAGCTAGTAATACGGCCGCAATACCCGCACAGGGGTATTGCGTATTGCGTATTGCGTATT 85531 23 87.0 56 GCG.................... TTTTTAGCTTGGGCTACTGCCGATGCTACTAATGCCTGTACCCAGTTTCTAAACAT 85452 23 100.0 54 ....................... TGTCTTTAGTGATTTTTTCGTTGTTTGCATTGAAGTGTAACAGTTTCTAAATCT 85375 23 91.3 56 ........CG............. ACTTTCGTTTGTGTGTTAAGTACCGCTTTTTGTACTGTTTCCAGGTTTCTAAATCT 85296 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================================================================================================================================================================================================================= ================== 9 23 97.6 79 TATCCCCGTAAGGGGACGGAAAC # Left flank : ATACTGAAATTCTGAAACTGATTTTCAAAAACTACGTCGTGTTTCTACAATTTATCCCCGTAAGGGGACGGAAATGAAAGCCCCGAGCTGGATTGATCGTCCGGTTCGGGGCTTTTGTCGGTGTGTTGATTGTCATGTAAAACTGGGCCACTTACTGGCCCAAAATTCAGTGTTAATTTTTATGAAAAACGGATTTTTTACGTTCTGAATTGACCCGCTTTTTCGAGTAAAACTGACCCACATAAACCGGCAGCATTATACGAGCCAATGAAAAACCACTCGTCCTAATCCCTGGCTATATATGACTTGAAGATTCTCTAGCTTTCCGTTATACTAAGTACAGATAGAGCCAAATCTGCGCCGGCCCGCATGGTGACTGGCTTGATGGGCATTTTCTTTAAAAAATAAAGTCCTGTCATGACAGATTTTTCAATCAGCGCCGATTTTGGTCGTTTCAGCCGCATGGGAATGCGGGTTCTGGGAGATAGGTTTCTAAACAT # Right flank : GCTACGTTGGCTATGCACCATTTGAGGATGGGATTATTGACGTTTCTAAGCATCAGTTCCGTGATGGAACGGATTTTTTATTTGTATAGCAAAAAAGCCCTCAAACTCTTGTTGAGTTTGAGGGCTTTTTTGGTTTTCTTCTGGTGTCGTATTGTGTTGCGGTCTATTGGGTGTTTTTCAAGTAAAACTGACCTGATTTAGTTGGCAGTTTGGGCTGGAAAGTGGTGGTTTGCTAAAAATTTATGTAATCCCTCTATTGACCGCTTCGCGGCCACTTTCCCCTCTGGGAAAGCCATCGTCTCGTATATTTAAATATAACTGACCTGATTTAGTTGGCAGTAGAGCGGCGGGTTCTTGTTTGCTGTGTGGAGGGATATACAAATTTTGATATTTCTTTCTTGGGCCTCTCTCCCCCGAAAATCGGGTACTCTCTCCGCTTTGCGGGGAAAGCCATCGTTTCATGTATGTTAAAACGCATATTTTTTGGTATTAGTCCAGCT # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.77, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 86868-86536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGK010000008.1 Megasphaera hominis strain NSJ-59 N28_ctg008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================== ================== 86867 23 100.0 50 ....................... CGCCGTCTACGTCAATTACAAACGGTTCGCCAAACTTTTTTTCTAAACTG 86794 23 100.0 57 ....................... ACTTTTTTCCCTGTGCTTGTTGTTACTTGTGTCATTCTAATCACTGTTTCTAAACTG 86714 23 100.0 58 ....................... GCTTCCAGAATATCGTCACACGAACGATATTTGTAGTTGCCGAATTGTTTCTAAACTG 86633 23 100.0 52 ....................... ATACTGAAATTCTGAAACTGATTTTCAAAAACTACGTCGTGTTTCTACAATT 86558 23 91.3 0 T.....................T | ========== ====== ====== ====== ======================= ========================================================== ================== 5 23 98.3 54 AATCCCCGTAAGGGGACGGAAAC # Left flank : CGTTCCCGTCGTCGGTTCAGGTAAGTTTTCAACCTGTTTCTACAATTTATCCCCGTAAGGGGACGGAAATGAAAGTCCCGAGCTGGATTGATTGTCCGGTTCGGGGCTTTTGTCGGTGTTTGTTGTTGATTGTCATGTAAAACTGGGCTACTTGCTGGCCTAATATTCAGTGTTAATTTTTATGAAAAACGTTTTTTACGTTCTGAATTGACCCGCTTTTTCGAGTAAAACTGACCCACCTAAAGCGGGCCAATGAAAACATCACTGGTCCTAATCCCAGGCAATATAATAGGTTATATATACATCTTGCAGATTCTCTAGCTTTCCGTTATACTAAGTACAAATAGAGCCAATTCTGCGCCGGCCCGCATGGTGGCTGGCTTGATAGGCATTTTCTTTAAAAAATAAAATCCTGTCATGACAGTTTTTTCAATCAGCGCCGATTTTGGTCGTTTCAGCCGCATGAGAATGCGGGTTCTGGGAGATAGGTTTCTAAACTG # Right flank : GAAAGCCCCGAGCTGGATTGATCGTCCGGTTCGGGGCTTTTGTCGGTGTGTTGATTGTCATGTAAAACTGGGCCACTTACTGGCCCAAAATTCAGTGTTAATTTTTATGAAAAACGGATTTTTTACGTTCTGAATTGACCCGCTTTTTCGAGTAAAACTGACCCACATAAACCGGCAGCATTATACGAGCCAATGAAAAACCACTCGTCCTAATCCCTGGCTATATATGACTTGAAGATTCTCTAGCTTTCCGTTATACTAAGTACAGATAGAGCCAAATCTGCGCCGGCCCGCATGGTGACTGGCTTGATGGGCATTTTCTTTAAAAAATAAAGTCCTGTCATGACAGATTTTTCAATCAGCGCCGATTTTGGTCGTTTCAGCCGCATGGGAATGCGGGTTCTGGGAGATAGGTTTCTAAACATTATCCCCGTAAGGGGACGGAAACCGGCCCCGTGAAGTATCTTTTGATGACATCATCTACACAGATTTCTAAACAT # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.83, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 87299-87487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGK010000008.1 Megasphaera hominis strain NSJ-59 N28_ctg008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================== ================== 87299 34 100.0 41 .................................. AGGTTGAAAACTTACCTGAACCGACGACGGGAACGTATTAG 87374 34 97.1 46 ...................C.............. TGAACAGTGAATTGATGAAACTACTGAAAGAGTACAGGAATTTTTA 87454 34 97.1 0 .......T.......................... | ========== ====== ====== ====== ================================== ============================================== ================== 3 34 98.1 44 TTTCCGTCCCCTTACGGGGATAAATTGTAGAAAC # Left flank : TTAGAAAAAAAGTTTGGCGAACCGTTTGTAATTGACGTAGACGGCGGTTTCCGTCCCCTTACGGGGATTCAGTTTAGAAACCTATCTCCCAGAACCCGCATTCTCATGCGGCTGAAACGACCAAAATCGGCGCTGATTGAAAAAACTGTCATGACAGGATTTTATTTTTTAAAGAAAATGCCTATCAAGCCAGCCACCATGCGGGCCGGCGCAGAATTGGCTCTATTTGTACTTAGTATAACGGAAAGCTAGAGAATCTGCAAGATGTATATATAACCTATTATATTGCCTGGGATTAGGACCAGTGATGTTTTCATTGGCCCGCTTTAGGTGGGTCAGTTTTACTCGAAAAAGCGGGTCAATTCAGAACGTAAAAAACGTTTTTCATAAAAATTAACACTGAATATTAGGCCAGCAAGTAGCCCAGTTTTACATGACAATCAACAACAAACACCGACAAAAGCCCCGAACCGGACAATCAATCCAGCTCGGGACTTTCA # Right flank : CCTGTCCCTGCCAACCCGCATTCTCATGCGGCTGAAACGACCAAAATCGGCGCTGATTGAAAATTCTGTCATGACAGGACTTTATTTTTTAAAGAAAATGCCCGTCAAGCCAGCCACCATGCAGGCCGGCGCAGATTTGGCTCTATCTGTAATTAGTATAACGGAAAGCTAGGAGATCCGCAAGACATTTATATTACCTATTATATAGAGCCTGGGATTGGGACCAGCGGTGTTTTCATTGGCCCGCTTTAGGTGGGTCAATTTTACTCGAAAAAGCGGGTCAATTCAGAACGTAAAAAATCCGTTTTTCATAAAAATTAACACTGAATATTAGGCCAGCAAGTGGCCTGGTTTTAGCAACATATAGCTTAGATGCCTGAAAAGCAAACGCGGGACGAATTATTCGTTAGGCTATGTCAGATTAGTATGGCTTAAGTATTCACTTTTCTATTTACAATATGCTATAATAAAGGAAACAAACGTGTGATAAACGATGCGTA # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCGTCCCCTTACGGGGATAAATTGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //