Array 1 395428-397381 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084032.1 Pectobacterium sp. LJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 395428 29 100.0 32 ............................. AAAATTAATACCTCCGTATGAAATTGATATTG 395489 29 100.0 32 ............................. GCATTGCGTAAATCAGGCTTGAATATCCATCC 395550 29 100.0 32 ............................. CATGTCCGTTTAAGCAAATTAATACAAAGTTG 395611 29 100.0 32 ............................. CCTGCTATCAGCTTCTCAAGCGGGAATCAGGG 395672 29 100.0 32 ............................. AACTACAAACATTTTCACTAAATGCCTATACA 395733 29 100.0 32 ............................. CTGTTCCTGTTCCCGTACCAGATTGGCAAACT 395794 29 100.0 32 ............................. GCTTCATCATGATTATCGGCTTCATTCTTCTC 395855 29 100.0 32 ............................. CCCCAACAACACGTCGGGGCTTTCGTTTTTTG 395916 29 100.0 32 ............................. GCTAGGAATTAATTTAAACTGAGTTTCCCCAT 395977 29 100.0 32 ............................. GATCATGACCTTCTCACCTTCCATAATCTGAG 396038 29 100.0 32 ............................. AACATCTGGCATTTTGCGATTTCCAGTTTTTA 396099 29 100.0 32 ............................. GCCGTGTTCATGTGGTACTGTCAAACAAAGGT 396160 29 100.0 32 ............................. TTCCTAGTCCTTTTGATCGTATTAACGTTCGT 396221 29 100.0 32 ............................. CACAGGACGTAGCTCACTCGCATATGGCCCAC 396282 29 100.0 32 ............................. CTATTCGTTTCTATGTTAGCTTTGCATACACG 396343 29 100.0 5 ............................. ATAGC Deletion [396377] 396377 28 75.9 32 ....CAGT.A.C.....-........... AAAGCTCGCCCAGGAACCCGCATTATTTGCGC C [396392] 396438 29 100.0 32 ............................. ATTGATGACCTGGTGGCTGGCAGATTGCAGCC 396499 29 100.0 32 ............................. CATATTTTCGGAGATAATGTTGTTAGGCATTT 396560 29 100.0 32 ............................. GTTGGCGTAGTCGATTGTTCCTTGATGAAGAT 396621 29 100.0 32 ............................. CATATTCTTTAAATGCCAATTGTTCAGCCGAT 396682 29 100.0 32 ............................. CGCTCAAACGAAGTCAAGCGCTTTTTGAAATA 396743 29 100.0 32 ............................. CGCGGCATGTTTGCGTTTGCTGCACACAAACT 396804 29 100.0 32 ............................. TATTTCATAGAAAACAAACTTACTCGTATGTA 396865 29 100.0 32 ............................. CTCAAACTCTGAGTATTGACGTCAATTTAGAT 396926 29 100.0 32 ............................. TCTCTCCATTAACATCAATGATAATGGTCGTA 396987 29 100.0 32 ............................. GGTTAAAAATCTGCTCATCTGTTGTAGCGAAA 397048 29 100.0 32 ............................. GCATACGCATTCGCCGTAACGCCTGCTTTACC 397109 29 100.0 32 ............................. TGTATCATCCCCTTTCCCGGCACCATTGAGTT 397170 29 100.0 32 ............................. GTTGTACGGTCAACGAGCAGGGCCAAATGGAA 397231 29 100.0 32 ............................. AACTACCGCAAAGGTACGCTGGATATACGCAA 397292 29 100.0 32 ............................. AAAATCCGCTTCCAGCAGAAAGATGGCCGCAT 397353 29 93.1 0 .............G..............T | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCATTGAGGACGTCTTATCTGCGGGTGGCATTACGCCGCCGCTTCCGCCGGACGATGCGCAGCCGCCGGCCATCCCAGAGCCGAAGCCGTTTGGTGACAGCGGTCACCGGGGACAAGGTTAAATGAGTATGCTTGTGGTGGTGACGGAAAATGTCCCGCCGCGTTTACGCGGCAGGTTAGCGGTATGGCTACTGGAAGTCCGTGCGGGTGTCTATGTTGGCGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAACAGATTATCGAACTGGCAGAGCAGGGCAACGTGGTGATGGCATGGTCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGATTTTTTTATGCCGAAAAAAGTGTTATAAAACAAAGCTATACTTTTAGA # Right flank : TCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAACACGCCAGTTTTGCATCTACCGTAACGGTGAGGTGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACAGAACATGCAGAGAAAGCGGCGTTGTCCGAACAGCTTCAGTCTTATCAGGCGGGAAGCGGTGCCGTTCCTGCCGGTGAGACGACGCGATATGATTTCACCCGCATTAGCCCAGCCGATCTGTATGAAACGGTAGAAGGCCTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGCTCCGCGCTGCTGGGGCTTATTTCGTCGCCACGAGAGAATGTCGGTAGCGTGCCGCCTTCCAATGTGTTCCAGCCGATTAATGTTTTCGATACCATTCAGCAAGGTGTCGCGGGGGCATCATCCCGCAGCGAAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1485182-1486004 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084032.1 Pectobacterium sp. LJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1485182 29 100.0 32 ............................. AAACTGGTGAGTTGGTGATGGAGGATAGAAAA 1485243 29 96.6 32 ............................T CCAACCCTGCGACGTTTCGTACAAATATCGGC 1485304 29 100.0 32 ............................. ATTAACCACATCATCAATAAATTCGCCGTAGG 1485365 29 100.0 32 ............................. GAATTTGAACGGCTCGTAAAAGAAATGATCCG 1485426 29 100.0 32 ............................. TTTTCGGGATTCCGTTGTTTGCCACGCAGCGT 1485487 29 100.0 32 ............................. TACCTAGAACAGATTGGCGATGAGGTTATGCG 1485548 29 96.6 32 ............................T CCCCAACATCGATGATCTGCCGGACATGCAGG 1485609 29 100.0 32 ............................. ATGAAAACGGTGATGGATTACCGGAAACTGCG 1485670 29 100.0 33 ............................. GACTTCGTTCCATTCCGTTCTGGAGAGTCTGGC 1485732 29 100.0 32 ............................. AACACACTCAATGATTTGAACAATCACCTGTT 1485793 29 100.0 32 ............................. CAGACGTAAGCGGCTATTCCGTTAAATACGCT 1485854 29 96.6 32 .........................G... TTCAACAGCTTTTTAATTTTCTGTAGGTGTTT 1485915 29 100.0 32 ............................. GTTCAGCCAACGCTCGAAATCTCGTTTCAGGG 1485976 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.0 32 GTGTTCCCCGCACACGCGGGGATAAACCG # Left flank : TTTATGGCCGCAGCGTGACCGATGCGTGTATTGGCTGGGAAGATACGGAATCCCTGCTGCGTCAGTTAGCGTCTGCCGTACGCGAACGCCGCAGTAAATAACACTTGAATGGCGAGCAGGAAGCTCGCCATAAAAATCCGGTACAGGCATTGAGGAATTCTCACAAATCTGGCGCAATAAATTAGAACCCTACTTTATTTGTTAGGTTCTGACCAGATTGGTAACAACAACGTCCAGCGTTATTCGTTTTAAAACCAGTGGGAGTGTCTCAGGATATTCTCAACACCTGTCAGATATAGAAGCACACCGCGTGCTTTCACCGTGTTAGCCTATTGAATTCTAAAAGAAAATTATCGTAATTTGGTAGAATAGAGCGGAACGCGGTTTGTCTTTTTTTATCTATTGATAATCAATGAGTTATAGATATGTACCGGTGTGGAAAAATCGGTAGGATTCTTTATTCTGGAAAAAATGTTATAAAACAAATCTCTATATTTAGA # Right flank : ACTCCAGCTAACAGGAATTACATACCATCAACGGTGCGGGTCAGTAATGCTGTAATAGTATGAAAAATAGTGGATATATCTGCGGTGCAGAAAGGTATTTACTCTGCAGGTGGCTGATGCGTTTTATCTTGTTTTTTATCGGTACAGTTTCGGGAAGGTATTGTTCGATACGGGCTAAGGTGAGCGATACGTTACACGTTAAAGCTGTGTTCGCGTCGAGAAGGGTATTCTGTCGAAAGTATATGGTATAACGCTATGTCTGTCTTTTTTACCCGGTCATTACTGAAGAGTTCCAGTAATGACCGGGCTTTTCTCATTCGGGGCTAAATTACTTCGCTTTACCCTGATTCGCTACTGCGGCAGCTTTTGCAGCGATTTCGTCTGCGTTGCCCAGGTAGTAACGTTTAATTGGTTTGAAGTTCTCGTCGAACTCATATACCAACGGCACGCCAGTTGGGATATTCAGTTCCAGAATTTCGTCTTCGCCCATGTTGTCCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //