Array 1 88925-90544 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRQ01000002.1 Neisseria meningitidis strain NCTC9714, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 88925 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 88991 36 100.0 30 .................................... TCAGGGCTATCGGGGCTGACCGGTTTATTG 89057 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 89123 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 89189 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 89255 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 89321 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 89387 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 89453 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 89519 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 89585 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 89651 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 89717 36 100.0 30 .................................... GCGGGTTTCCTGTGTGGCGCGTGAATTTAA 89783 36 100.0 30 .................................... CTCTCCCCGGCCCTCCCCCACAGGGGAGGG 89849 36 100.0 30 .................................... CCGGGTGTCGGAATTAACGCAAAATTATTA 89915 36 100.0 30 .................................... AGATTGCGACATTGAAGAATGTAGCGACTT 89981 36 100.0 30 .................................... CCAAAAAATCTACACAAGCATGGAAATCAC 90047 36 100.0 30 .................................... ATACGCGCCTCGCACTTGTCCACTCGAGCA 90113 36 100.0 30 .................................... ACCTGTTCCGTCCTTTGCTGTTCGTCCTTA 90179 36 100.0 30 .................................... CCTGAGCATCAAAACAGGCGGAAAATTGCT 90245 36 100.0 30 .................................... GACAGCCAACAGCACGAAAGCAACGGCGAA 90311 36 100.0 30 .................................... CCCTTCGCTGTATCAAAGTCAGAGAAAGCA 90377 36 100.0 30 .................................... AAGAAAAAGACATTATTGATGAATGGATGG 90443 36 100.0 30 .................................... AATGGGTGCAAACGCTGTACCAAATCAACG 90509 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //