Array 1 1165-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL635694.1 Bacteroides sp. 3_1_40A supercont1.42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 1164 33 97.0 32 ................................A AGGGAAAGTTTATAGCCTCTTTTGATGGGCAA C [1140] 1098 33 100.0 31 ................................. TCGGGTATGTTACAAAGCGTAGTTGGTTTTT 1034 33 97.0 31 ................................C GTCTGTCTGTGGAAGTGCACCCGGATGCGGA 970 33 100.0 34 ................................. TTCGATAAAAATATGTTGTGACTCCGTCAGTGCC 903 33 97.0 33 ................................G CTTAATAGCATAGATGTTCGGTCATCCACCCTA 837 33 100.0 31 ................................. TCCATATTGCTAATGTTTGTGATATTGCTAA 773 33 100.0 34 ................................. CGGAATAATGGGATAGAGAGTAGGGCGTGGATTG 706 33 97.0 32 ................................A TTGACACATATATAAAAGCCGTTTTCTGTTAA 641 33 97.0 33 ................................C GCTATATCTGCTGTTTAACGGAAAGGCACTGGG 575 33 97.0 33 ................................A TGTCTGCCTTGCTTATTTCGGTTGCCAGATTGG 509 33 97.0 33 ................................G TAGACTGATTGAAATCTTCACCGATAAGGGTGA 443 33 100.0 33 ................................. CAAGAAAATGAGTATAACACCATCTCGCGTCTT 377 33 97.0 32 ................................A CGAAAATCAAACATATCGATAAGATCAAAATT 312 33 100.0 31 ................................. GTGTATACTCCCGGTACGGATGGTTATGTTA 248 33 97.0 34 ................................G GGCATTGACAGGCGGGGATATCACAAAGGAGAGT 181 33 97.0 33 ................................A AAAATGGTCTTACAACAACAATCTTATAGGATG 115 33 97.0 32 ................................A TTATGCCGTTATGTTTAATGATTTTAAGCCAT 50 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= ================================== ================== 18 33 98.0 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATAGGACCGGG # Right flank : CCTTGAAAAGAGAAGATA # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-11.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 512-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL635724.1 Bacteroides sp. 3_1_40A supercont1.72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 511 32 93.9 33 -...............................C CGCACGGTCCGGAAAACCCAGGCGGGACTATAT 446 33 100.0 33 ................................. TTAGTTCTAATGTGCAAGTTGCACCAGTAGGAC 380 33 100.0 31 ................................. CTCTTGCCGGGAAAGAAGTCATCGGGCTGGG 316 33 100.0 33 ................................. TGCTTTTGCTTTCGGAATTGCTGCTGAAATAGA 250 33 97.0 34 ................................A ACGGCTATTACCTAATGTCCCGATAATTGACTTA 183 33 97.0 33 ................................C CATTCCCGTGGGATGAGGAACGGGAACCGATAG 117 33 97.0 30 ................................G TTTTTAAAGATGAGGCTATCCGTTTGGGTA 54 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 8 33 97.7 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : | # Right flank : AACGTAAAAGATGTACTGATTA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 197031-197459 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL635657.1 Bacteroides sp. 3_1_40A supercont1.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 197031 33 100.0 33 ................................. TACTGGGAGATGATATCCGATCTGGAGAACGGA 197097 33 100.0 33 ................................. TTATTAGAATGATACACAACAACCAGCAAGAAG 197163 33 97.0 32 ................................C ATGACGACCCAAAGCATAATAATCTTAACTTA 197228 33 100.0 32 ................................. CTCCTCCGTGTATAGTTGCATTTATATCTATT 197293 33 97.0 33 .............................G... CGAAATAGCGTAGCGATCCTTGCTCATCACAAG 197359 33 97.0 33 ................................A CGCAATCCACCACTATCATAGCTCGGATGAACT 197425 33 90.9 0 ....................A.........G.A | TA [197444] ========== ====== ====== ====== ================================= ================================= ================== 7 33 97.4 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTC # Right flank : ATTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGCAAATATATTATATTTTTACTATACTATCCCTTGTTGCTTATTTGTTATGTTATTGATTATTAATGTATTGTTATCTGTTTGTATCGATTGTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGGATGAACCGCAAAAAAGTCCATAAAATGGAA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //