Array 1 77963-81411 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWH01000003.1 Pasteurella multocida strain HND06 Contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77963 28 100.0 32 ............................ ATCGTAGTGCGCCTGTAAGGATAAGTTAACCA 78023 28 100.0 33 ............................ GTGTTGGTGCAGAGCCTAACACATCACGTTGTT 78084 28 100.0 32 ............................ GTTGCAGACTGTGATTATGCTGATACTAACAT 78144 28 100.0 32 ............................ CCCGAAGATGTTGACGTGGCTATCTCGGAAGT 78204 28 100.0 32 ............................ AATCTGCAACTGATTAAACTTAGCTTCAAGCG 78264 28 100.0 32 ............................ TCATTGAGAAGTCGCTTAGCGTTCGCTACGTC 78324 28 100.0 32 ............................ AGCATATAAATAATGTGCTGAGGTTCGACCAA 78384 28 100.0 32 ............................ CTGAACGTTCCACAGGTATGCTGTCTCAACTT 78444 28 100.0 32 ............................ ATTCATAGTATTACCACAAGAGTTCGATTAAC 78504 28 100.0 32 ............................ AGCGTGTAGAGAAGAAACATAATCACAACAAG 78564 28 100.0 32 ............................ CATAGTCGCTTCCTTTTAAGCAAATGCAAATT 78624 28 100.0 32 ............................ ACATCTCAATCGTAGTCTCAGCATCTGAAGAA 78684 28 100.0 32 ............................ ACCAACGGTAGTTTACTGGGTCTTGGGCCGAC 78744 28 100.0 32 ............................ TTACAAAGCAGTTAAGTATTCAGAATCTTCAA 78804 28 100.0 32 ............................ GGAAAGCGGACAATCTAAGCAGTTTGTTTCAA 78864 28 100.0 32 ............................ AAGCATACGATTGAAGGTAATAGGAGGTCTCT 78924 28 100.0 32 ............................ AAAAGGTTTCCTTGATAATACAATGCCTCATA 78984 28 100.0 32 ............................ GAGATGGTGAAAGCTATGTCTGATAAACGTTA 79044 28 100.0 32 ............................ TGTTATGACTTTATCATACGGTGCCACAAAGT 79104 28 100.0 32 ............................ AAATGGGGATAGACCAGAACACGTTAAGAACA 79164 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 79224 28 100.0 32 ............................ TTGAAAAGACCTATCTCCTGTTCACGCACTGC 79284 28 100.0 32 ............................ TAGTGGACGCTGATAACGGTCTTCCACTTCTT 79344 28 100.0 32 ............................ ATTCGCAGGCGTCTTGAGATGTTAGTGTCCCT 79404 28 100.0 32 ............................ ATTGATTCACGGATACATCTAAACATTTTATC 79464 28 100.0 32 ............................ TTTAGTTACTCATCTAGCCATTCATTACTCAT 79524 28 100.0 32 ............................ TCCGATAAGTCAACAATCATGAACGATGACTA 79584 28 100.0 32 ............................ TAGTCCGCCATATCCTCACCACTATAATGTGG 79644 28 100.0 32 ............................ TGTAAGAATAAGTTAACCATAATGTACTCCTG 79704 28 100.0 32 ............................ AAGTACAAATTAAGTACATGGAGAAGACTAAT 79764 28 100.0 32 ............................ ATAAAGAAGACTACGGGATTCAACTAAAGGTA 79824 28 100.0 32 ............................ ACATTAGCATACTCAAAGCAGAACGCTAAGAA 79884 28 100.0 32 ............................ TATCGCATGGTTGCGTGAGGGTAAACAAGAGA 79944 28 100.0 32 ............................ AATGGACGAAGTTTAATAGACGCAGGGAAAGC 80004 28 100.0 32 ............................ TCAATCAGCCCAACATGTTGACCACTATTCAG 80064 28 100.0 32 ............................ CTTCCGATTTTTGATAGTCAAAGACTACTGAG 80124 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 80184 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 80244 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 80304 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 80364 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 80424 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 80484 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 80544 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 80604 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 80664 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 80724 28 100.0 32 ............................ AACCGAACAAGATTAATAACGCGACAGTCGGG 80784 28 100.0 32 ............................ ACTCAGCAAGTCTTCCAACGACTAAATATTCT 80844 28 100.0 32 ............................ AAGCGTAGTGAATGGTCTGTAGATTATTTTTT 80904 28 100.0 32 ............................ TTCTCACTTGTCTGCGTACATTAAAGTTAATC 80964 28 100.0 32 ............................ GCAAGTGGCACTTGTGCAATTGAGCCGTATTT 81024 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 81084 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 81144 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 81204 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 81264 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 81324 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 81384 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================= ================== 58 28 99.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15658-16045 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWH01000010.1 Pasteurella multocida strain HND06 Contig010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15658 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15718 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15778 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 15838 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 15898 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 15958 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 16018 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGAGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //