Array 1 337790-336601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTG010000003.1 Streptomyces olivaceus strain xian20 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 337789 29 100.0 32 ............................. GGACGGCCCCCGGGGGGCGAGGAAGGGAGAAG 337728 29 100.0 32 ............................. GTCACCAGAGAGGACCTGGCCAGGCGCATCCT 337667 29 100.0 32 ............................. CCGGCGCCGGATCTCTGTCCGCACTGCGGGAG 337606 29 100.0 32 ............................. AGGTCTGGAGTGACGGACGCAGGCCCTTGGTG 337545 29 100.0 32 ............................. TGATCGCGCGGGTGCGGAGTGAGGGTGATCCA 337484 29 100.0 32 ............................. CACGTGCCCTTGGAGTTCCACGTCCCCCTGGT 337423 29 100.0 32 ............................. GGGGGCTACGCATGATCGCCCGCCTCCTCTGC 337362 29 100.0 32 ............................. GCGGTCCAACCCCCCTCGCAACATGGCGGTGC 337301 29 100.0 32 ............................. CCCCCTCGCTCCCTCGCACGCGAGGGAGCGAG 337240 29 100.0 32 ............................. TGCATGCCATTCACGCGGACGTTGACGCTCGC 337179 29 100.0 32 ............................. GAAGCGGTCCGGCTATCCCAAGAACTCATCAA 337118 29 100.0 33 ............................. TGCATAGGGGACGTCCTCCGGCTGAGGGGGGGG 337056 29 100.0 32 ............................. GCGAGCGGGGTCGAGGACCAGGCCGCCCTGGT 336995 29 100.0 32 ............................. GAGCGAGAGGGCCGGGGGTTCCCGCCCCCGAC 336934 29 100.0 32 ............................. GTCCGCTGAGGAGCCGATGCGGACCCAGACCG 336873 29 100.0 32 ............................. GCCCCGGAGAAGACGCGGGACAGCGTGTACCT 336812 29 100.0 32 ............................. ACCCAGTAGCCGCGGTTCCGGGACTGCGGTAC 336751 29 100.0 32 ............................. GAACGCGAGCGGATCGCCGCGGCGATCGCCGG 336690 29 100.0 32 ............................. CCGAGCAAGAAGGACCGGGCCTGGCTCCACGA 336629 29 89.7 0 .............C...A..........T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.5 32 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : CCGGCATCAACCACGACGGCCCCGAGGACTACGGAGACGAACTCTGGTGACCGTCATCGTCCTCACCAACTGCCCAGCCGGACTACGCGGTTCCTCACCCGCTGGCTACTGGAGATCTCCGCCGGCGTCTTCGTCGGCAACCCCTCCGCCCGGGTCCGCGACGCCCTCTGGCAAGAGGTCCAGCAGTACGCAGACCAAGGCCGCGCCCTACTCGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACACCTGGCACCCGACCGACCACGAAGGCATCACCCTCATCCACCGCCCCGACCCAAACGCGCCGCCCCCCGGGCAAGCCCCAGCAGGCGGACCACGCCCCGGCTGGAGCAGAGCCGGCAGACGCCGCCGCTTCGGAAGAGGCTAAAGCACACCATGCAAGATATGCACGATTTGCCGGAATCAACGAAAGTACTCGAAAACCGCTCCCTGCGCCCATAAACCCGCAGGTCACCCAGT # Right flank : GCCCCTGTTCTGCGCCCTCACATACCTGTTGCGCGACACGCAAGTTCATCGAGGCAGGGCCCCACCCCCGGCCCGAGGGCTGGTCCACTCGCACCACACCACCTTGCCCGGCGACCGTTCCGCCACTCCCCATTTGTCGGCCAGCTCCGACACCAGCAGCAGCCCGCGCCCGCTCTCGTCCGACCGGTCGGGGGCCTGAGGTACGGCCGGTACCCCGTCCCCGCTGTCGTGGACCTCGACGCGCACACCGTCCCCGCAGGGGAGCAGCCGCAGCAGAAAGCCCCTGCCAGGTGGTGCGCCGTGCACCAGGGCGTTGGTCGCCAGTTCACTGACGCACAGCGCCACGTCGTCCGCGCGCTCACGCACACCCCAGTCGGCGAGCACCTCGTGCGCGAACGCCCGCGCAGCTGGGACGGACCGGCGCTCTCGGCGGTAGAAGCGCTCACGTGGGGAGAGGGGTGGAGTTTCGTTGTTCACGTGACGAGGGTCACGCTCCGTGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 348240-349929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTG010000003.1 Streptomyces olivaceus strain xian20 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 348240 29 100.0 32 ............................. TCCGCGATCTGGCACAGTTCGTCGAGGACCAC 348301 29 100.0 32 ............................. GCTGAACTTCCTTTCTGTTCTGCGCTCCATCA 348362 29 100.0 32 ............................. AGCTCGCGCGCCTGGCCTCGATCTACGACCCG 348423 29 100.0 35 ............................. GGCGCGGCGGCGTTCCGCACGTCGGTGGCGTGCGG 348487 29 100.0 33 ............................. GGGCTGGGCGCCGCGAGCCTGCTGGAGTTGCAG 348549 29 100.0 32 ............................. GTCAGCAGCTGCTGGGAGATCGCTGCGTTGAG 348610 29 100.0 32 ............................. GAGGCGCAGGCGCGGACGAGCGCGGCCCGGTC 348671 29 100.0 32 ............................. AGAACGTTGATCAACAGTCGCGAAACGTTCAA 348732 29 100.0 32 ............................. GACGTCGCGGGCGCGCAGCTCGTCGCCGTCGA 348793 29 100.0 32 ............................. CGGTACAGGGTCGCGGAGGACAGGTATTGGGT 348854 29 100.0 32 ............................. AGGCCGGTGTGCAGGGGATCGTGCCCGGACCC 348915 29 100.0 32 ............................. ACTCCGACCCGCCACGTCGACCGGGAGCCGGC 348976 29 100.0 31 ............................. GCTGGTCGGCCGATATCAGAAGATCGGCCGC 349036 29 93.1 32 AC........................... ACCGCGCACCTGCCCGGCGCCGACCCGATCCC 349097 29 100.0 32 ............................. GCCTTCTCTGCGAGGGTGGCGAGGCCGCCGCG 349158 29 100.0 32 ............................. AACGACCGCGCGGACGCCCTCCAGCGCCGCGC 349219 29 100.0 33 ............................. CGCGGCCGGACAGCAGCAGAGCGGGCAGCCGTC 349281 29 100.0 32 ............................. ACCCCCGAGTTCCGGGGCACCGCCGTGTGCGA 349342 29 100.0 32 ............................. CCTGTCTACTACGCCCGGTGGGTGGAGTACGG 349403 29 100.0 32 ............................. GCCGCCCTCACCCTGGTGCGACGCGGTGAAGC 349464 29 93.1 32 ..G.........................G GTGAAGACGAACGTCACGTCGCCGGCGTCCGC 349525 29 96.6 32 ..G.......................... AAGGCGGACGTCTACGCCGCGACAAAGGGGAG 349586 29 93.1 32 ..G........G................. GACCCGCAGACGGCCTCCCTGCTCCACCACGA 349647 29 89.7 41 ..G................A.....T... GGGCCGTCGGCGGCGAACGTGACGTTCGCGGCGTTCGCGAC 349717 29 93.1 32 ..G......................T... GGCTACGACGGATGGCTGATCGACGCCACCGG 349778 29 93.1 31 ..G........G................. GCAGCAAGGGCGACAAGGACCCGGCCGAATG G,T [349795,349804] 349840 29 79.3 32 ..G....T...G...C........CT... AACACCCCGAACCCGACGGGCGGCGTGCAGGT 349901 29 82.8 0 ..G...............T...G.TT... | ========== ====== ====== ====== ============================= ========================================= ================== 28 29 96.9 32 CTCCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : TGGCACGCGAACGCCGGGGTGGCCTTGCCGATGTCGTGCACCCCGGCGAGCCACACGGCGAGGGCACGGGCATCCGGCTCTCCGCCGGGCAGCGCCTCGGACACCAGCTTCCGCACGCTTGCGGGCAGCCACTGGTCCCACAGCAGTCCGGCCACTGCGGCACTGTCCTCCATGTGCCGCCACAGTGGCAGCCAACCATCGCTCTCACGATCATGCTTCGCCCACACCGACCGTGCCGGCTCCCCAAGCCGACGCAGCAGGGCGGAACGGGCGTTCCCCCCATTACTCATGGGTGATTGATACAGGGAAAACCCGGCTAGCCATGCCAAAACGAAGAAACTGAAGAATCGGTCCAGGGTCAGCTCTCCCAAGACATACGATGAGCGGCTGACCCTGGAGACGTTACGATCGCGAGCATCACCCGAACGCCCTATTTGCCGGAATCTGCAAAAGTCTTGGAAAACGCGCTCCCGCGCCCATAAACCCACAGGTCAAACAGT # Right flank : CGTGATCGCCGCTCGGGTGTGGCGGCGCTTGGTCGGCCCTGGCCCTGTGGCATGGCGCAGTGGAACCCGTCTCGTCGTTGATCTCTACTCTTGTTCAACTCAAGCGGTATTCGTCGGAGTATACTCTTCGTGTGGATACGACGATCAAGATCGATTCAGAGACCCGTGACAAACTGGCGGCTCTGGCTGACGCCAGGAACATGTCGATGCGAGCATTGATCGAGGAGTTCGCTGCAACCGCGTTGACTCCTGCGCAGTTGCGTGAGCGGGCCGAGCGTACGGACGCTTTCCTGGCCGAGGAATTCGGGCACCAGGTCAGCGAGGACGAGGCCGGAGCGCTGCGCGAACGGATGCGTCAGGCCCAGAGTGCAGGTCCGGCCCGGGGCACGGCCGCGTGATCGTCGAGCACTACATCCTGGACAGCCCCACGCTCCTCGCCATGGGAGGCAGTAAGCAGGTCTCCGGGCTCATCCATATCGCTGCAGGGGATCCCACGGTGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 350861-351259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTG010000003.1 Streptomyces olivaceus strain xian20 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 350861 29 100.0 32 ............................. GGGGAGACCGACGAGTCGGGGGTGCTGGTGGA 350922 29 100.0 32 ............................. TGGACGGGATCCTTTGCATAGCCGCGGATCTT 350983 29 100.0 32 ............................. GCCACTACTCCGGGTCTTCTGGTCGGTCACAT 351044 29 100.0 32 ............................. CGGCTCGAGGACGCGGTCGCCGCGAAGTGGCA 351105 29 100.0 32 ............................. GCCCACGGCCCCGACCCCATGGGCCGCTGCGA 351166 29 82.8 37 ...............A.........GATG GTTCCTGGACCACACGCCTGCCGATGAAACCGCTGTC 351232 28 75.9 0 .......T....T........C.-A..GT | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 94.1 33 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : CCTCGCCATGGGAGGCAGTAAGCAGGTCTCCGGGCTCATCCATATCGCTGCAGGGGATCCCACGGTGCGTTTGTGGGTTCCCATCGTGTGTGTGCTGGAGGCTGAGCGTGAACGGGCCGGTCTCGTGGACTACTTGGGCATCCTCGACGTCTTGCATACCCTGGACGCCGACTATGCGATGGCGCACAGGATTGCTGACCTGTATCGCCGGAATGTTCCCTTCGGTGTGGGGGCTGCCGTGCACGCCGCCCAGCCCACGTTGGACCGTCCTGACGGTGCTCTTGTCGCGACGGTTGCGCCCGCCGACTACGACGGCCTCGGAGCTCCGGTCATGGATCTCAATCGGTAGCCGAACACCTGGTACGGCCGATGCGCGAGCTTCCTCCGGCTGGGCTGTCCGGTAGTAGTCTCGATGCATTGAGGGAATGGCCCTTTTGTCGGAATCTGTAAAAGTCCCCGAGAGTGCGTCGCCGCGTCCATGCGGCCGCAGGTCAATCAGT # Right flank : TTCCGACCGAGCCGCCCGGAATGACTTCTACAACCGCTCCGACAACATGGGACCCATGTCGGGAAGCGAGAACTCTCGTGGCGGTGCGGTCATGGACGCCACCTACCGCCAGGATGTCCACCCCTCCCTCTACTCGTGCAGCTAGGGTCCTGTCCCGAAGTGCAGGAGCCACCTCATGAACCCTGGATCCGTCCTGTCCGCCCTGCCCGGCGCCGCTTCCGTTTCCGGTCTGGCTTCCGCGTGGCGGTGGTCGCCGAACCCGATGTTCACGTTCACCGCTGCGCTCTCCACCGACGGTCGGCACAACCTGCAGGTCAACGTACGCGGCCCCTACGGCGAGGGCTTCGTCACAGCACTGCTCGCCCACGCGCGCGCCCATGGTGGCACGTTCGTAGAGCAGAGGCGGCCTCTGGTGGCCGTCGGCGGCTTCCAGTACGACGGGGCGGCGTTCGACACGGTGGGGGTAGCGGCGCCCGAGGTGCACGGCTACCACGCCGCGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 352317-353384 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHSTG010000003.1 Streptomyces olivaceus strain xian20 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 352317 29 100.0 32 ............................. TCTCCCGTGCCCACCCACTCTCCCCAGCCAGC 352378 29 100.0 32 ............................. TGGTCCCTCACTTCCACGGGAATAGCGTTCAC 352439 29 100.0 32 ............................. CTGGCGCGGGCCATAGACCGGCACCGCGACGA 352500 29 100.0 32 ............................. GAAGCGGGCTCCCTCCCGCAAGAGCGGGAGGG 352561 29 100.0 32 ............................. TGCTGTGCCATGCGGCGCCGGGAGGACGTGTC 352622 29 100.0 32 ............................. GGCCCGCCAACCGGCGGAGAGCATGCAGCTGC 352683 29 100.0 32 ............................. CCCGAAAGGACCACGCCGTGAAGGCTCTCACC 352744 29 100.0 32 ............................. ACTCACCGGCGCCTGGACCAAGTGGGCATCCC 352805 29 96.6 32 .........................C... CAGGCTGTCATCGACGCCGAGGAGCAGCTGCC 352866 29 100.0 32 ............................. AGCACACCTACACCTGGGGCCGGTGCGCGCTC 352927 29 100.0 32 ............................. AAGCGATGGGAAAGACGCAACGTCGAATTCTC 352988 29 96.6 32 ..........T.................. AGCCTGTTCGGCAACCTCGGCATCGTCGGCCT 353049 29 100.0 32 ............................. AGTTCGGGCCGTCGGGCCTTCAGCTTCGCGGC 353110 29 100.0 32 ............................. GGCTCTGAGGGTGGTGGGGTCGTCGATCTCAT 353171 29 100.0 32 ............................. CCCAAGGGCTACGGCCAGATGACGATCGCCAA 353232 29 100.0 32 ............................. TCCTCGTTCTCCTTGGTCACCGGTCCACCTCC 353293 29 100.0 32 ............................. GCCCTGATGCGCAAGGAGAAGGGCAACACGGC 353354 29 86.2 0 ...........A.T..........AC... | G,C [353371,353377] ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCCGGCCGGGAGAACGAGGAGGAGGCCTGGGGCAGGTTCCGCAAAATGCTCCAGCCGAACAGGCTCGACCGCACCGAGGTGCCGTTCGTCAAGATGCGCTACGACAACACCCGTACCCAGAGCATGAGCAAGGGCGACGCCCGCGGCTTCGCGCCTCTGGAGACTCTCCAGCGGGAACTGGGGCTGCTCGACGGCGCTCCCGGCAGCTTCGTCGAGTGGGAGAACCGGCACGGCGCCGTCTGGCGGGCGGACAGCAACAGCGACGGCCTCGAGCTGGCACACGACGGCACGCGGGACACAGTGGACACCGACCAACTGCAGGCAACGGCCCGCACCAGCGTCCAATGAGCTCTGCCCCGTGCCCGTTGCCCGCAGAGTTTATGCAGAAGCGTAAGGTGAGCCCGATTTACATCACATGCTGCTCATGTCTCATTTGCCGGGTCCTGTGCAAGTCACTGAAAGCATGCCCCTGAGCCCATAGACCAACAGGTCAGACAGT # Right flank : CTGCGGAGATCGGCTTCAGGGGCGGTGGGTCAGTTCACCGGAGCTTCTCGCGCGTCTGCGCGCCGCTGGTGGGCGGCGCGCAGACGGGTGGGGTGTGCTCGGTGCGGGGGCGGTCAGGCCCAGCAGCCGTTGACGGTGGCGGCGAGGCCGTCCATGGCGTCCTTGATGTCGGTCGGGTCGGCCGTCGAGTTGTTCTCGATGAAGGAGAAGATCCGCCAGTCGCCGTCCTCGGTCTTCGTGACACCGCTGAGGGCGATGGCACCGGTGAGGGTGCCGGTCTTGGCCTGGACCTTGCCGACGGCGCACTCGGAGTTGGGGTCGTCGAAGCGGCCCCACTCCGGGCCGAGGCTCGCCCCGGCCTCACCGGCGACCGGCAGGCCCTCCAGGATCGAGCTGAGGGCGGGGGACTCGGTGATCGAGTCGAGGAGCTGCGCGAGGGTGGCGGCCGGGATGCGGTCGTCGCGGGAGAGGCCGCTGCCGTCGTGCATCTCGAAGTTGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //