Array 1 91444-92072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPR010000006.1 Listeria innocua strain FSL L7-1661 NODE_6_length_97333_cov_38.324330, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 91444 36 100.0 30 .................................... TCGTTGATAGCGCGCCACTGCTACAAAAGA 91510 36 100.0 30 .................................... CCTTTTGCAATGATGACATCAATGTTCAAA 91576 36 100.0 30 .................................... ATCGGGCACAATAACCGCTGTTAATCTTAA 91642 36 100.0 30 .................................... AGGAATTGACTCGGATAAATAACTTTATAG 91708 36 100.0 30 .................................... TGCTTTTTCCCTGTTTTTACTGCGCTGTTT 91774 36 100.0 30 .................................... TTTATTCGCTATGAACGAGAGCCGGGCCAT 91840 36 97.2 30 ................C................... AACTGTTTTCTTAGCTGCATCTGTTGCCCC 91906 36 100.0 30 .................................... AGTAAAGGTATAATAAATGTAACTATAGAA 91972 36 97.2 30 .......................G............ AGAGAGGGTGAACTCTAAATAATCGGAAAT 92038 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TGATAAGCTGACTGCAACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCATTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAACGTATGTGCCTATTTAACAGAAGATGAGTTACAAGAGTTAAGGAGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGGTTTTCGCAGGTTATCCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAAATTCTACGAG # Right flank : CCATCTCTCAATCCACTCCAGCTAGAAAAGTTACACCATTATGAAAGAGAGGCTCCAACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAAAACTACGACATTCGAAAATAAGACAAATTTTATATACCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTACCTACTCCAAACATTTTAACCCAACCTGCAATTTCCAAGTCGCTATAAGTGAAGGGAAATTGCCGTTAAAAGGCGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTATATTATAAAAGCTAGTAAAGAAAGCGATACCCTTGAACTATATACTTCATGGAACGGCGAAGAAAATTTACCTTTGAGGAATAAAACAGAATTAGCCATAGAAAATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1212702-1211062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPR010000001.1 Listeria innocua strain FSL L7-1661 NODE_1_length_1531543_cov_30.575985, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1212701 29 100.0 35 ............................. TTAGTATTCCGAGCCGGGAATCTGTGAAAAAATCT 1212637 29 100.0 34 ............................. TTTTATACGCTGAAACTTAGCGAGCTGCTTCGCC 1212574 29 100.0 36 ............................. GATTATATTTAAGCACCGCTATGTCAACCGCGATGC 1212509 29 100.0 37 ............................. GAAATACATCGAAAAGAATTGGCTTACGAAAACCTGA 1212443 29 100.0 36 ............................. AGCGCACATAAATTCTATATTTTCTTTCGCTGCTGC 1212378 29 100.0 36 ............................. CCCATCAGCGTGCGTAGTACCAGATACTATTGAACC 1212313 29 100.0 36 ............................. AAAGCCGCAGACTTAGAGAAAGTTGCGACGTTCTTC 1212248 29 100.0 34 ............................. CATCTTCACTTGTAAATGCTTTGTGTGTTTCACT 1212185 29 100.0 35 ............................. GAAACAACAGAGGAGCATGAAGCTTTGCAACAAGA 1212121 29 100.0 35 ............................. TCGGTCACAAGTGGTAACACAGCACCTGCTTTGGC 1212057 29 100.0 35 ............................. TTTGTCTGATGCTCATTGATCTATTTCTCAACTTT 1211993 29 100.0 35 ............................. GAAAGAGCTTCTTCTTTAGAATGTGCTATAGTGTA 1211929 29 100.0 36 ............................. AAATTAGTAGTTAAATTCGTTGCTTTTTCGGACATT 1211864 29 100.0 35 ............................. TCCGTTAGCACAATGACATTTCGGGGGTCTATGGA 1211800 29 100.0 36 ............................. GTACTTATTTGAGTCAATTGATTTTTTTCGCTTTTA 1211735 29 100.0 37 ............................. TTAGATGTAGATGCTGATTATGATGATAAATTTCAAT 1211669 29 100.0 34 ............................. TGAATGTAACATATCTACTATTGTGTTTCATTCG 1211606 29 100.0 35 ............................. AGTGCTCCAAGAACAAATGGTGGAACAACTACAAT 1211542 29 100.0 34 ............................. TTCATCAAGCTATCAGGATTTCCAATGACAAAGA 1211479 29 100.0 36 ............................. TTCTGTTTGGAAGTAGCTGTGTCGGCAGCCCAAGTC 1211414 29 100.0 34 ............................. TAAAAATTGATATTATTGTTGGACCAGAAGCACG 1211351 29 100.0 35 ............................. TATTGTACTCACCTAAATCGTGATCAAGCGATATT 1211287 29 100.0 37 ............................. TTCGAATCCTTCCGCTTTCATAGCAGCAACAACCTTT 1211221 29 100.0 36 ............................. AACGCATTAAATGGCGTGGATTTATCGGATGTTAGA 1211156 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 1211091 29 93.1 0 .......................C....C | A [1211066] ========== ====== ====== ====== ============================= ===================================== ================== 26 29 99.7 35 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCAGCAAGAAAGCCATTATAAAGCCCTTGGTTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACGCCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //