Array 1 155-1200 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIV01000033.1 Propionibacterium australiense strain NML98A072 NML98A072_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 155 36 100.0 35 .................................... TGCGACGAAGTGCCCGGCCTGCTGCTGCCCGTCAC 226 36 100.0 37 .................................... CTTTCCCCCGCGAATCCATCGGCCAGGTGCCCCGGAA 299 36 100.0 38 .................................... GCGCCCACATCTACGGCCACTGGGGCAACGCATCCCAA 373 36 100.0 38 .................................... CGCGACGTCCTCGACCAGGGCGCCCCCCTGTGCGGCAT 447 36 100.0 38 .................................... CTGTTGGTGATGAACTTCGCCCAGCTCCAATGGCTGAC 521 36 100.0 35 .................................... AAGGAGGTTGAAGCACACGACGCGACCCTATACCG 592 36 100.0 37 .................................... GTCGTGCCGTCAGGGACGGCGCGGACAAGGTGTGCAG 665 36 100.0 35 .................................... GTGTTGCAAACGTCGGCTTCGGAGGACACCGACGT 736 36 100.0 37 .................................... TTGACATCCGCGAGGCGATGGAGCGTATCCAGACGCT 809 36 100.0 36 .................................... GATTCACCGTCCCTCCAACTCGTCGGAGATGTACAT 881 36 100.0 35 .................................... GTGCTCGCGCAGCTGCGCGTAGCCACGATCAGGGA 952 36 100.0 35 .................................... ACACGATCACCGGGCTCCTGACAAGCGCCGGAATG 1023 36 100.0 35 .................................... CTGACTTGCTGAGAATCTAGGCTACTGCGTGGTAG 1094 36 100.0 35 .................................... GCAGACGCCGAAACTTATCGCATCTCCTTCGACAT 1165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 15 36 100.0 36 GCCTCAATGGAGCCCCACCTATTCAGGTGGGGAAAC # Left flank : AGCACCAGACCCCCGAACAAACCTTCGGAGCATTCGCCTCGTACATCACCGGACGCACCTTCGACTACGACTTCGAACACCTCCCCAAACCCCAACCAGAAACCGATCTTGTTTCATGACGGCCATACATGTTCGATTCCGTACCGGATTATATG # Right flank : CGGCTGCCAGATTTTGTAGGGGCTGACAAGCGGCGATGCTTCGTGTTGCGAGTGCTCCTCCGTTCTTGTCAGGATCGTAAGGCGTCTCTATGGTCTTGTCAACATGAACATGGCTCTGACAAGGGTGCGAGCGCTCACGCGGGGCGGCGGCGGGACACCAGCTCTCGCACCGGCCCCCACGTCGACATCATCCTACATGGAGATGGCTTCTCGATGCGGTCCCATGGCCGTCACGCTCTCCTGAGCCGGGTCAACGGCAACTACTGCTTCTCTCCTCATCGAAGGAAACCAGTCCGCGGCGAGCACCACCTCTGGCGCCATGCACTGAACATGTCAATGGTTTCGTCGGGCGGTGGGGAGTATCGAGACGGTAGTGGACGGCAACTGTCCATCAGCGGGCTGTTGCTGATGTCATCGCCGCCTCGTCCGGGAATGTTTCATCGGTTCGCGAGTTCGTGTGGGATTCTCGGCGCTCTGGTCTAGGAAGGGCGCACCCGGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCCACCTATTCAGGTGGGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.70,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 178-1375 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIV01000012.1 Propionibacterium australiense strain NML98A072 NML98A072_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 178 36 100.0 35 .................................... CCGGTGAGGGTGGGGGTGATTATGGTGCGGGCATG 249 36 100.0 36 .................................... GCGACGATCACCTCCACACCCCCTCGTGGGTGGCCT 321 36 100.0 36 .................................... TTGGTAGCTGAGACCAAGATCATCCCTCAAAGAGTC 393 36 100.0 37 .................................... TTGCTCGCAATGGTGTTGTTGACCAGCTCGTAGAGCC 466 36 100.0 37 .................................... TTCTTTCTTCTGGTTGTTGACGTCGTCGACGACCCAC 539 36 100.0 36 .................................... CCACGCGCTGATGCTCTCAGCAAGCGCCTCGCCCAG 611 36 100.0 37 .................................... GAGCACTCTGACCTGCTGTCCCGCGAGGGCTGGGCGC 684 36 100.0 37 .................................... CATCTTCCAGGACGTGTACGAGTGGGCCGGTGAAGAG 757 36 100.0 37 .................................... CCGGTGACGTGACTGCCCCGGACGCAAATGATGCATG 830 36 100.0 36 .................................... GTGGACAAGGTGAAGGAGTGCGGCACGGTCCCGGAT 902 36 100.0 36 .................................... ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC 974 36 100.0 36 .................................... ACAGCCGACACGGCGTGCACGCGACGCTCTTCTACC 1046 36 97.2 37 ........................T........... GAGGCGCTCCTCGGTGACATGTGAGCGTCCGTGCCGT 1119 36 100.0 34 .................................... GTTGACCGCGGCGGCTAAGACCGCGCAGTGGCGG 1189 36 100.0 42 .................................... TTCAGCTGTGTCACCACGGCTGTATACCGATCTGATGTACAG 1267 36 100.0 38 .................................... TTGCTGATCGCAACGTGCGTGTGCAGGTCGGGGTCACC 1341 35 94.4 0 ..........................-T........ | ========== ====== ====== ====== ==================================== ========================================== ================== 17 36 99.5 37 GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC # Left flank : AAGATGGCTTCGGCTTTCATCCGCACAAGTACGTAAGTGTCTGTGCGTTTCTTCCATCTGATCAGGACAGCGGTTTCTTCCGGGGTGACCTCGATCTGCATGTCTCAATCATATCCGAAACAAGACCCCGAATCCATCAAAAATACGATTTCGTTTCATGACGGCCATAGCACGACAG # Right flank : CGTGCAACTCACGGCCAAGAAGATCGAGAGCCCGGAGGGTTTCCCCTGGGTCTCCGTGACGCTGCGCCCATTGCGGACAGCGCCGTGGCTGATCTGGTCAGTGTCACTCCCCCCTGGGAGACGGTCATCGTGCCGATCACGCCGGAGTCTTCCAGCCTCCGGGCGGCAGCGCCACCTCGCAGAGTCACCACATACCATCCGCACCGTGCCGCCTGACCCCGGGGCGAGCACTCGCGTCAGGGCATCGAAGGCCAAGGATGAAGAGGGGCCGCGGAACGATCGTTCCGCGGCCCCTCTTCCGGTTCTGCTCAGCCCTGGTGGGCCTTGCGGGCCGACCAGGCCGAGGCGACCATGTCGTCCAGGCTGTTGCGCATCTTCCAGTCGATGTCGCGGGCCGCGAGTTCACCGCGGGCGACGATGCGGGCCGGGTCGCCGGGGCGCCGGGGCGCGATCTCCGGGGTGAAGTCGATGCCGGTGACGCGGGCGATGGCCTCCATGAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCACCTGAATAGGTGGGGCTCCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 657-987 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIV01000041.1 Propionibacterium australiense strain NML98A072 NML98A072_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 657 35 100.0 38 ................................... ACGGGTCGAAGCCTCTTGCCTGGTTCTCTCCCACAGGA 730 35 100.0 40 ................................... TTCTTCCCAGTACTCAGGGTTTCCGAGCAGGTCCTCCAGA 805 35 100.0 40 ................................... TACTCATATGAGCCAACGGCGAACCAGAGCCTCCGCCAGA 880 35 100.0 38 ................................... CGCGGCATCTGAGATCAGGGTGACCAGCTCAGGATCAA 953 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 5 35 100.0 39 TTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Left flank : GCGGGATCCCCAAGGAGTCGAGCTCGCGGATGCTACCGGCCTTCGAGGTCGGCTTGATCACCCGCGCCAACACCAGCTGGGCGAACACGTCATCTGCGAGAACCTCGAAACCAAGATCGGTATAGACACGGCGCAGGCTGTCCCATAACGCGGTCGAACGCTTGTCAGTGATGGTCAACGACCTCGAGGCCGCAGCCGGTGACAGAAAGTCCAGCTCGTCCTGCAACGGCGCAAGCTTCCGTCTCGCCGCGACGACAAGGGCAGACAGTTCCTCAGGGGTGTGAGCCGACCCGAGATGCTCCAACACCCGGTCACGCCCATCCCGATACTCCGCGATCTGGACAGCCGTCGCACCCGAAGCCGTTCTCACCTTCCGAACGTACGCCACACCACCCCTCCAACAACCCGATTAGTGTGTGAACCACACTAACCAACCCCGCTCTCACCAGGCAAAACACCCACAAACACCCACCAACCAACCAAAAGTGGCACGAGTCAGG # Right flank : CACCTGGTGCTCGGCCATGAATCATTTCTTTTCCCATCTATGGCCGTCATGAAACAAAACCGTATTCTTGATGGATTTCTGGTCTTGTTTTCGGATATGATTGGGGCATGCAGGTTGAGGTCACCCCGGAAGAAACCGCTGTTCTAATCAGGTGGAAGAAACGCACAGACAATTACATGCTGGTGCGGATGAAAGCCGAAGCCATCCTGTACGCCTCCGAAGGAGTCGGGCTGGGAATCATCGCGAAAATGGTCGAGCGCAGCGAGAAAACTGTTCGGGAGTGGCTTTCCGGCTGGCAGTCCAGCAGGATGTGCTCGGTACTCACCGGGCACGCGGGGAACCAGAACGCGGCGAAACTCACCCGCACCCAGAAAGAAGACCTCAAGACGGTTCTGGCCCAGCCGCCTTCCCGGTCCGGTATCGACGCAGAGTTCTGGGATGTTCCGGCCCTGCGTGACGTGGTGAAGATCTTGTTCGATGTGGAGTACGAGTCAGAGTCT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 186702-183946 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIV01000001.1 Propionibacterium australiense strain NML98A072 NML98A072_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================================================================================================== ================== 186701 36 91.7 36 .......................C.........A.T GAGCATACTCCACCCATAATCATGGGCTTTGCCTAT 186629 36 75.0 158 A.............T.A..T.G.T....A.....CT AGCTGCAGGGCGGGTCCCAGCTGCTGGGAAATCGGATCTTAACGGAGCCTCACCTTTATGAAAGAGGATGCTAGCACGAGTTCTCAGCACCCGCAACCTTGCGTCCCCAATCTCAATAGGGCTCGATCGTCGGGTCATCGTGCACCATGCATACTACC 186435 36 97.2 36 T................................... AACGATCAACACGGAGGAGGGCAACGCGTACGGCTG 186363 36 100.0 38 .................................... GCCGCAGGTGACAGTGATCCTGTCTTCCGTCATGGCGT 186289 36 100.0 39 .................................... CCAGACGGCGACCCAGATGGGCTACAACGAGGAGGAAGC 186214 36 100.0 36 .................................... GCCCGGCGACCCGCTGTCGCAGGCGTACGAGCTGTG 186142 36 100.0 36 .................................... CGAGATCGAGGTCATCGACGGGGACCGCCGCACCAA 186070 36 100.0 36 .................................... GCCCTGCAATGTGACAGAGTCCTTGCCGATATCGAG 185998 36 100.0 36 .................................... CTCACCATCCCCGATGAGAACGACTGGGATGGTATT 185926 36 100.0 35 .................................... TCAAGTAATCAAGTAATGGAGCACAACCATGACCA 185855 36 100.0 38 .................................... GCCAGGGCGACCCACTTGGCCCAGCCCATGATCGTGAC 185781 36 100.0 35 .................................... TCACCGAATTGTCCTGCGGACACAACAAGCGAAGG 185710 36 100.0 37 .................................... AGCGGGCCGGTAAGCTCTCCGGCTACCTGATCTACAA 185637 36 100.0 35 .................................... GTCTAGCCGCTCAGAAGCAGGCTGTCAAGTGACTC 185566 36 100.0 35 .................................... CCGGGCTGGTCACCGACTGGCTCGAAGGAATGAAC 185495 36 100.0 36 .................................... CTCTCCTGCGCCTCACAGAAGACGGTTGGGTAACCC 185423 36 100.0 36 .................................... GCTCAACAAGCGGCAATGCCTCGCGTTGAGCGAGCT 185351 36 100.0 36 .................................... GTGGTTGACGGCCATCTATTACTTCGTCCGCCACAT 185279 36 100.0 35 .................................... TGGGCCGCCGAACAGTCCGCCTCCTACGCGGTCGA 185208 36 100.0 35 .................................... GCCAGCGGCGGCGCCACCGGCAGCGGAACCACCAT 185137 36 100.0 35 .................................... GCGCCGGATGCCGTTGTTGTAGACGGTGTTGATGA 185066 36 100.0 35 .................................... CGGAGCGGGCTGATGCTGCGGGGTAGGGGGACGGT 184995 36 100.0 36 .................................... TCCCGATCACGATCGACGCCTCACGGCCTAGCTCGT 184923 36 100.0 35 .................................... TACTGCCCGGGCCGCATCACCGTGGGCGTCCAAAT 184852 36 100.0 35 .................................... CTGTTCGGTGAACGCGGCCTGCCGCCCACCGGCAT 184781 36 100.0 37 .................................... CCGCAGACGAGATCGAAGACTTGATCGCGGACCTGGA 184708 36 100.0 37 .................................... CGCCACAGGTCAGGGCACACTGCGAAACCTCTATGGT 184635 36 100.0 36 .................................... CAGCCCCTCCAGCGGGTGCTGCGGGTAGTAGCGGGC 184563 36 100.0 37 .................................... GTCGCATCGTGTGCTTCAATCTCCTTCACGAGGTCAG 184490 36 100.0 37 .................................... CACCCTCACCGGAGGGAGACCGCCCGAGAGTGGTTGA 184417 36 100.0 36 .................................... ACAGCTCCGTTCGCCTGCCGGGGATTCTTCGATGAA 184345 36 97.2 37 ...........................T........ CGGATGGTGGGGCGCCGGCCGTGCGGCCAGGCATGAG 184272 36 100.0 35 .................................... ACGTCGGCGGTGGTCACCCCGAGCTGCTTGGACAG 184201 36 100.0 39 .................................... GGACACCGGAAGGCTCGTCGCGCCGGCGAACTCGGCAGA 184126 36 100.0 36 .................................... TTGGCACCCTGGTGAGGGGGAGAGTTCTGTCACTCT 184054 36 100.0 37 .................................... GCCCAAGCCTCCTCGGAGGCGTTGTACTCGAGGCCGA 183981 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================================================================================================== ================== 37 36 98.9 40 GCCTCAATGGAGCCCGGTCCTTAGGACCGGGAATAC # Left flank : GCTTCTGCGGTTCTGCGGGTTGAGTTTCAAGCTGCCGGACCCGTTCGACAAGCACCGCGACGAGCAGGCCATCACCCGGCGAATGGCCGTGGTGAAGGCCCAGGTCAATGACCTGTTGGGCGCTGGCTGTGAGGTGTATGCGGTCGACGAGGTGCGTTTGGAGCACGAGGCCGAGACCCGCCGCATGTGGCTGCCCAAGGGTCAGCGCACCAAGTTCTACCGTCTGCGCCGCTGCCTGGCCATCGTATCCGCGGCCACGCACCGGTACCGGCCCTGGTCACTGCTGCGTTTCACTTCCCGTGACACCACCGACACATCCCGACCGATCCGCCGAGCGATCTCCCGGAACGAACAGCCCTCATCGAGCCCCTTTGCGATCGCGGCCCGATCAACAACGGTCAACACCCGGCGCCCCGCACCAACACCCCCGGCAAGCACTGTTGTTACGACCCCATGGCACCACCCCCGAGCAGCCACCAGTTCCGCACCTGCCCCTGAAT # Right flank : GGCTCGCCAGTTACGAGGCTGCTGACTACCAGTGTTGCATACTTTTGCGAGCGCTGCCACTCGGCGCCTCGTTGGACAGCGGGAAGCACTGCATGAACTGGCCAGAAACCGGTCCTGGCTAGGGTGCGAGCACTGTCGAAGGGGCTGGTCGGTATCAGAGCGCTCGCTAGACAATCTGGGGCCCTCGTGTGGGAAGCAGCCTGCGGTGACCCACGAACGTGAACCGGTCTCCACTGGGGTCGCCCAAATCAACGATCACCACTGAGTCTACAGCCAAGTCCATGATATCCTCACTGTCCGCTTGTAAATGGATGAGTTCTGTCCTAGTTAAGTCGCAGACGAAAACGGAATACTGAAGACGTTCCCCGTTGGCCTCCATCAGCTTGCAGATTCGACGAAGTCGCGTCTGGTTACGAATGTCATAGGCTATCAGATATCTTCTCCTTCTCGTTTTCATCTGGTCATCATCGCCGTGTACTGGTCGAGTTCTCCGATCATGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGGAGCCCGGTCCTTAGGACCGGGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.30,-15.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 2244-1223 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIV01000048.1 Propionibacterium australiense strain NML98A072 NML98A072_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2243 29 100.0 33 ............................. TATCCACACTAGCATCAACCTTACCGTGCAGCC 2181 29 100.0 33 ............................. TGCCTGTCAAGGATGCGGAAAACTTCTTTGTCG 2119 29 100.0 33 ............................. TCGCCTTCCGGCAGCGCCGGCACATGAGCCATA 2057 29 100.0 33 ............................. TTAATATCGCCCCTCCATGAGGGCTTGTCCTCG 1995 29 100.0 33 ............................. CCGTGTCAATCACAAACCCATTGCTGCCAGCAA 1933 29 100.0 33 ............................. CGCGGCGAAGGTCTTGCCGGTGAGGCCGAGCGC 1871 29 100.0 33 ............................. TTCACGAAGTCATCCTCGCTAAGAATATTAAGG 1809 29 100.0 33 ............................. AGCCAGTGGCACTGTGTTCAGCTACCAAGGAGC 1747 29 100.0 33 ............................. GATAACCCTTGCAACGGGACACCCCCGCACGAG 1685 29 100.0 33 ............................. TGGGTCTGCAGGTGGCTCGCGGCGGTGATTATG 1623 29 100.0 33 ............................. TTTCACGAGGTTCAGCCTCGCCACCCGCCTACA 1561 29 100.0 33 ............................. CGAAGTCTGGTGGCCTTGAGTATGCGCTGCAAT 1499 29 100.0 33 ............................. TTTGGCCGCGGTTTTGGCGTGGTTTGACGCGTC 1437 29 100.0 33 ............................. TTTGGCCGCGGTTTTGGCGTGGTTTGACGCGTC 1375 29 100.0 33 ............................. TCCTTTTTGTGGCCTATTTCCATGCCGGCGATC 1313 29 100.0 33 ............................. CACGGCGGCGGCCAGCGACAAGACGGCGCTCAG 1251 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 33 GAATTCCCCGCGCCACGCGGGGGTGAGCC # Left flank : GAGATTGTCGAGTGTTTGGTAACCCAATTATCTCTGTGGCAGGCCCTCACCTTTTATCATGACACGCCCATACTGGTGAAATAGCCTCCAAGATCACCCCTCAAACCAAGAGTTTTGAATAACCCTCCCGGTATCGGGCACGGT # Right flank : CAGCTGGTAGCAGCTGTGGAGGCTGAGGCGGCCTTTCCCGTGAAGCCTGCGTCGAGGCCACGAGTAACGTGAGAATACCGGTTGCTTGACGCTCACCCGAGCGACTGTATACCATCGTGACAGATGGGGACACCTCGACAGCGTCGGGGCGGAGTTCCACATCTTTTCTTCGGGAACCATGGTTCCTATCGGATTCGTGCGCGTTCAGTTGTGTCCGCGCCTGGGTGGGTCAGCCCTCTGTGCCGGGCTCATCTGGTTCTACCGCCTCTGTGGTGACCTCCAGCAGATCGCCGACGTCGCAGCCCAACGCCTCGCAGATGGCCACGAGCGTTGAGAATCGAATGGCCTTCGCCCGGTTGTTCTTCAGCACCGAGAGGTTCACGACGGTGATGCCGACCTGTTCGGAGAGCTCCACGAGCGTCATGCCTCGTGCCTCCAGGAGCAGGTCCAGGTGACAGACGACGTGTGGGTCGGGTGACGGTGCGGCGCTCACAGTGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTCCCCGCGCCACGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.40,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 58546-59953 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIV01000014.1 Propionibacterium australiense strain NML98A072 NML98A072_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 58546 36 100.0 36 .................................... GATTTCAATGGGAATGAATCAGCGGTTTTCGTACAG 58618 36 100.0 36 .................................... TCGACTCTTGGACGACATCTCCCGCCTCCGCTTGTC 58690 36 100.0 34 .................................... TCGGAGCCGGTGCGCCACTCGCGCGGCACGACAA 58760 36 100.0 37 .................................... TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG 58833 36 100.0 37 .................................... TTACTCGGCCTGCTTGTAGCGCTCCCGCCAGTAGCTG 58906 36 100.0 37 .................................... CCGATTATTTTCAACTGTTTCGTCCTCGGGATGGTCT 58979 36 100.0 36 .................................... TCCAGGGCCGGCCGAGGGAGCAGGGGGTGTAACGGC 59051 36 97.2 37 ....................A............... CGAACGGGCCCGTAGGCAGCCCCAGCTGAGAGCAGTA 59124 36 100.0 36 .................................... TCCACCTACCAAGAACCCGACGAGCGCTGCAGCCGC 59196 36 100.0 38 .................................... GTCAGCATGTTGTGACTGATCATCGCAGTGACCTGCAC 59270 36 100.0 38 .................................... CATAATCGCCCTTTGCTGCCCACTGGGCATATTCGCGG 59344 36 100.0 37 .................................... CCGAGTATCCTCTTCTGCTGAGGGCAACTGGTGCACC 59417 36 100.0 36 .................................... ATCTGGAGGCCGGTCGAGGTCCAGGCCCTGCACCTG 59489 36 100.0 36 .................................... AAGAAGCGCGCCGCGTCCATAACCGCGACAACCGCC 59561 36 100.0 35 .................................... AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT 59632 36 100.0 35 .................................... AACAGGCGGATCAACGCCTTGCCCTCGTCAATCTT 59703 36 100.0 35 .................................... AAGAGGCGGATCAACGCCTTGCCCTCGTCATTCTT 59774 36 100.0 36 .................................... CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG 59846 36 100.0 36 .................................... CCGTGTTCATCCCGACAACCTGCTTGACACCGGGGG 59918 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 20 36 99.9 36 ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Left flank : GAGAGATCCCTGAGTACAAGCCCTTCGTGACGAGGTGAGGAGCATGGCGAGACGCCGCTATCTGATCGCCTATGACATAGCGAATCCGAAGAGGTTGAGGGCCGTCGTCAAGCTGATGGAGGACTTCGGCACTCGCTTGCAGTACTCGGTGTTCCTGTGCGATCTCAGGCGTGCTGAGCTCGCGGTCTGGCGTACGGCCTTGACGGACGTTGTCGAGTTGAAGGAGGACTCGGTGGTTGTCATAGACTTGGGGGCAGTGGGTGCGACCCCGATCGAGGTCATCGGTCTGGCGAGGAACCTTCCCAGCCAAGGAGCTGTCGTCGTGTGAGGCCTGCGAGAGATCCTGCCCCGCCGGTGCCCCGCGAGACCGCTCGCAGCCTTGCCAGAGGCCTGTTAGCGTTGACAAGACCATAGCGATGACCTACGATCTAGGAGTGCTGGTGGGGCCGCTCGCAATCGGGTTCGTTTCCCCTTGTCAGATGTCACAAAATCTGATAGCC # Right flank : CCATTCCGGGAGAGTTATTCAAAACCCTTGATTTGAGAGGGATCTTGGAATCTGTTCTGCTGGTATAGGCGTGTCTGAATGAACGGAGAGGGCCTGCCTGAGGTAATTGGATTACCGAATACGTCAATTACTCTCGGAGCAGGTCCACGCGTGTACCCTGCAACAGGTTTACCGGCTGAAGCAGTCACAGTCCTCTACCAGACTCTTGCCCACAATTACCCCCGCACCTCGCAGACCACTGGGTGGCCACCAGCACTGAGTCCAGCAGAAGAAATCAGGGCCACACTCGTCTACCTGCGGCGCAACCGGGCCCACGGGCGAAATTGGCCTAGTCATTCGGGGTCAGCCAGTCCTCGATCTGCCGGGCCATCAGCCGGTGGACTGCTCGTATCGTCGAGGTCCTCGCTGACCTCGTGCCCACGGAGAGGACTTGGACCATGCCCAGACACTGATCGTGGACGGCACCCTCGTGCCCTGCTGGGACTGCAAACACACCCAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 60888-61147 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIV01000014.1 Propionibacterium australiense strain NML98A072 NML98A072_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 60888 36 100.0 41 .................................... CATGATCACATCGGACAACCAGCGGACGGAATCCGTGGCCT 60965 36 100.0 37 .................................... TAGCCGATTTCGCGGAAATAGTAATGCTGGACGATGC 61038 36 100.0 38 .................................... TACTGCGGCGCCACACGGAACAGCGACAGCTGACTGAG 61112 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 100.0 39 ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Left flank : CCATGCCCAGACACTGATCGTGGACGGCACCCTCGTGCCCTGCTGGGACTGCAAACACACCCAGGGCCCGTACTCGGGCAAGCACCACACCCCCGGACTGAACCTCCATATCGCCAGCACCCTGACTGGAAAACTCATATGGGTCGGATCGACCCACGACACAAAGGCTCTACAACTGATCGGTTTTCTTGACATTTTCCCGGACACTCCGCCATTGGGTGACAAGGGCTACATCGGGCTGGGTATGACAACCCCGATACGCGAACAACCAAGGGGCGGGCTCACAGGCTGGCAGAAAGAATACAGCAAAACCATCAATTCGCTACGCGCCCCGGTCGAACGAGCAATCGCCCAAGTGAAGACCTGGCGGACACTCCACACCGGCTACCGCAGACCCCTACACACCTTCCCGCAAACCATCACAGCAGCCACAGCACTAGAATTCTGCAAAACAGTTTTGAATAACCCTCCGGGTGCGGTGACCAGGGCGGCCACGTCGA # Right flank : ACGGGTCGAACCCGACTCGTGCCACTTTAGTGTGGGGGCCAGGTGAGGCCGAGGGTGTCGAGGATGGTTTGGGCTGCGGGTGTGATCTGGTCGTGAGCGTGGAGGGTTTGGCCAGCGATGTTGACGTTCATTTCATGGATTGGCTCGAGTGTTTCGATGATTTTGGCGACGGATTTCCCGGTGATTGTTTGCAGGCGGTGTGAGACGGCGAGTGCGGCCATCACGATGGTGAGGTGGGCTTCGATCGCCTCGCGGGTGTGATGGAAGATCGGGCGGGCTTTCAGGTCGCTCTTCGACATCCTGAAGGATTTCTCGATTAGCCAGAGCTCGTGATAGTCGGCAATGAGTTCTGCCGCGGAGATTCGGGTGGCGGGCATGTTCGTGACGTAGCCTTTC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCCATCTATTCAGATGGGGCTCCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 420-945 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIV01000061.1 Propionibacterium australiense strain NML98A072 NML98A072_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 420 30 100.0 32 .............................. GTCTGGAAATCGACCTTCCCAGAGGACACCAT 482 30 100.0 32 .............................. ATCGAGCAGGCCACGGCGAAACTGGCTGGCCT 544 30 100.0 32 .............................. CATCGGGGGCCGCACCACCGCGGACCACTATG 606 30 100.0 32 .............................. CGCGCCCTGACCACCATCCAGGCCCTGCCCGT 668 30 100.0 32 .............................. GCCCGCGCCGAGTGGTACTGGCAGCTGCGCAC 730 30 100.0 32 .............................. TCCTCGACCCCGACAGGCTCGGCTGGACCCTC 792 30 96.7 32 ............T................. TGATGATGGACTGGCGGGGTCCGGAGTCGTCG 854 30 96.7 32 .............................G ACTGGGCCGCCCTCGCAGCCACCGGCAAGCCC 916 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 9 30 99.3 32 GAATTCCCCGCGCCACGCGGGGGTGAGCCC # Left flank : GAAAGGCTACGTCACGAACATGCCCGCCACCCGAATCTCCGCGGCAGAACTCATTGCCGACTATCACGAGCTCTGGCTAATCGAGAAATCCTTCAGGATGTCGAAGAGCGACCTGAAAGCCCGCCCGGTCTTCCATCACACCCGCGAGGCGATCGAAGCCCACCTCACCATCGTGATGGCCGCACTCGCCGTCTCACACCGCTTGCAAACAATCACCGGGAAATCCGTCGCCAAAATCATCGAAACACTCGAGCCAATCCATGAAATGAACGTCAACATCGCTGGCCAAACCCTACCCGCTCACGACCAGATCACACCCGCAGCCCAAACCATCCTCGACACCCTCGGCCTCACCTGGCCCCCACACTAAAGTGGCACGAGTCGGGCCAGAGCCGGCGGGCCTGGCCTGGGGCGTTCCAG # Right flank : TCGGCCAGTTTAATCCGGAGGGTTATGCAAAACTGTTTTTGTAGAATTCTAGTGCGATGACTGTTGTGATGGTTTGTGGGAAGGTGTGGATGGGTCTGCGGTAGCCGGTGTGGAGTATTCGCCAGGTTTTGAGGCTGGGGGATTGCTCGTTCGACTGGGGCGCGTAGCTTGTTGATGGTTCTGTTGTACTGTTTCTGGTTTTCTGTCAGCTCGCCGTGGACTGGTTTTCGTTCCGGGGTGATCATGCCCAGTCCGGTGTAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTCCCCGCGCCACGCGGGGGTGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.10,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3322-133 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCIV01000015.1 Propionibacterium australiense strain NML98A072 NML98A072_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3321 29 100.0 33 ............................. TGACTGGCACGGACGGCACCCGAAACGCCGGTG 3259 29 100.0 33 ............................. GACGCCTAGCGGGTTGTTCCAGCTCTTCTGCCG 3197 29 100.0 33 ............................. CTACGACATGCCCAACGTGCGGCTGACGGCCGG 3135 29 100.0 33 ............................. CGCTCGTTCCTTAATATAATCACGAACGGCGTT 3073 29 100.0 33 ............................. CTGTCGGGAGCACTCCGTGAGGACTCACTGAAT 3011 29 100.0 33 ............................. CCACATCTCCGCGCTCTTGGCCAGCTCAAGCAT 2949 29 100.0 33 ............................. CGATTGAAACCGTTGAAGAGGCAGTCGAGTTCC 2887 29 100.0 33 ............................. CTCTAAGCGGAGCCCGCGCGGCAGTCAAAGCAG 2825 29 100.0 33 ............................. CAGACCGGCAGCTGGGGACTGGATGTCCGCGAA 2763 29 100.0 33 ............................. GCCTGCTGCCAGCATCGCTGACGCCCACGGCTC 2701 29 100.0 33 ............................. CGCGGTCCTCGAGGTGTACGAGCTGTTCTTGAC 2639 29 100.0 33 ............................. CAAGCAGCCCGCACACCGCGACTGCAACCGCCA 2577 29 100.0 33 ............................. TCGCCGTATTTGCAATCCCGCCTGCTATCCCAC 2515 29 100.0 33 ............................. CTCGCGGATATGTCGCTTACAATCAATCAGAGC 2453 29 100.0 33 ............................. TGTCCACGGTGTCCCGATCGGTTACCCCCACAC 2391 29 100.0 33 ............................. CACGTTGCGGGCCCTGGACCGGATGCACACCAC 2329 29 100.0 33 ............................. TGGTTTTGTTGTGGCCAATTATCCGAACTCGAA 2267 29 100.0 33 ............................. GTCGGTAAGAATCGTGAATGGGAACGCCGGTAC 2205 29 100.0 33 ............................. TTAATAACACAATTCATCGTAAAGTAGACAACG 2143 29 100.0 33 ............................. TAGTCATGTAGCGATTAATTGCGTAGCCATAGC 2081 29 100.0 33 ............................. CCAGTCAGTTTCCTGAGCACATTCTCCCACAAG 2019 29 100.0 33 ............................. CCAGTCAGTTTCCTGAGCACATTCTCCCACAAG 1957 29 96.6 33 ..........................A.. GTGGAACACGTGTGTGCAGATCGTGTACCGCCG 1895 29 100.0 33 ............................. CGTGACGATCTTGTGGTCCAAGTCGTTGACCAC 1833 29 100.0 33 ............................. CAGCAAACCCAGGACCACCAGGACCGCCGGGGC 1771 29 100.0 33 ............................. CCACGGATTGCACCTCTGATAATTCCACTGATG 1709 29 100.0 33 ............................. TTACTCTAGGCAGAACAAGGCACAGCTCGAAAG 1647 29 100.0 31 ............................. CACCTCGTGGGTTTCTTTCAGCGCCGCCATT 1587 29 100.0 33 ............................. GATTAGCGAACCCATCCGCCAACACAAGATGTT 1525 29 100.0 33 ............................. TGGCCCCACCGACATTACCGGACAGGGCCTGCC 1463 29 100.0 33 ............................. CGGGCAAGTTTCTGGGCACGGCGGCAACCCGTT 1401 29 100.0 33 ............................. GATTAGCGAACCCATCCGCCAACACAAGATGTT 1339 29 100.0 33 ............................. TGGCCCCACCGACATTACCGGACAGGGCCTGCC 1277 29 100.0 33 ............................. CGGGCAAGTTTCTGGGCACGGCGGCAACCCGTT 1215 29 100.0 33 ............................. GATTAGCGAACCCATCCGCCAACACAAGATGTT 1153 29 100.0 33 ............................. TGGCCCCACCGACATTACCGGACAGGGCCTGCC 1091 29 100.0 33 ............................. CGGGCAAGTTTCTGGGCACGGCGGCAACCCGTT 1029 29 100.0 33 ............................. TGGGTAGCCCATTCCTCCATGGTGCCCTGGAAA 967 29 100.0 33 ............................. CCGCCCGGCGACGAGGACCTGAGCCAAGACCCC 905 29 96.6 33 ......................C...... CGCCTCCTCGGACTGCACCTGCAGGCCGGTCAG 843 29 100.0 33 ............................. CCAGTGGGAGCGCGATTGGCGCGAGCATTACGG 781 29 100.0 33 ............................. TGCATGGCGACCGTGCAGTCGTCCGATGAATGG 719 29 100.0 33 ............................. CCAGGCGACGATCCGGCTCTTGCCCTCGTACTG 657 29 100.0 33 ............................. GTTTTTCTATTCGCAGGACGCGTGGGTGCGCAA 595 29 100.0 33 ............................. CCTCTGATCGTGTGAACACGTGTTCACCGGACC 533 29 96.6 33 .......T..................... GCGGTTGATCGTATCAACGCCAAGTACGGCCTG 471 29 100.0 33 ............................. TCCACCCGTAGTGCTCGCGCCAGTCGCGCTCCC 409 29 100.0 33 ............................. CATGACTTATAGGAGGTACATTAATGACGCTTG 347 29 100.0 33 ............................. TCACACATCAACCTGCTGAAGTCGTATACGTAT 285 29 100.0 33 ............................. GGACATGCCCTCGCCGTCGCCTCCTGACGGCGT 223 29 100.0 33 ............................. GTGACGCCGCGTCGAGTATTCCGGTGATCGAAA 161 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.8 33 GAATTCCCCGCGCCACGCGGGGGTGAGCC # Left flank : CATGGTGATGAAGATGCTGAATACGGCTGGGACGTTATTGAGCTCTGGGATGACAAGATCGGGGTAGTCGCCGGTGGGCAGCAATGGGGGTGATGGGTGTTGGTTGTTCTTGTCCTCACTGCATGTCCTGCAAGTCTACGCGGACATGTGACTCGATGGGTGCTCGAGATAAGTCCTGGAGTTTTTGTTGGGCGCATGCCAGCCAGAGTTAGAGACGAGTTGTGGGATCGCGTCATGGAGCTCTGTCTGGATGGACGGGCTATCATGGTAATCTCGACTCGTAACGAACAAGGATTCGATTTTCGAGTCCACAACCACAACTGGGAAGTGATCGACGCTGATGGGCTACGCCTCATGCGCCGACCGTCTCAGAACAGCAATGGTGCCAACCCGATGCGTAGGGGCTGGAGCAAGGCCTCTCGCTACCGTAGGGCAGTCAAGCGAGGCCGAGGCTGAGCTATACTTCATCCACAAGCTGGTGAATGGGCTAGCCAGTTAGG # Right flank : CCCAGACCTGACTCGTGCCACTTTTGGTTGGTTGGTGGGTGTTTGTGGGTGTTTTGCCTGGTGAGAGCGGGGTTGGTTAGTGTGGTTCACACACTAATCGGGTTGTTGGAGGGGTGGTGTGGCGTACGTTCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTCCCCGCGCCACGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.40,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //