Array 1 2852205-2850711 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019410.1 Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2852204 29 100.0 32 ............................. CAATTTATTCAGTTGATCCCTTTTCTCGAAAC 2852143 29 100.0 32 ............................. CCTTCAGGCGAGTATTCGCAAAATTCTGATGG 2852082 29 100.0 32 ............................. GAAACCAGGCTATTGCCTGACAGGTGGTAAAA 2852021 29 100.0 32 ............................. TTTAAAAAAGGTCGTTCCTGCAATGCGAGCCA 2851960 29 100.0 32 ............................. GTAATTTGGATAGCTTTAATTGCAGCCGTCAG 2851899 29 100.0 32 ............................. CCACCGACCATCTCGCCGCGACTTCTTCAAAA 2851838 29 100.0 32 ............................. GCCTACGTGTGTAACGCTAAACTGCGCGGTTA 2851777 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 2851716 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 2851655 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 2851594 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 2851533 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 2851472 29 100.0 32 ............................. CCTGTAGCGCTGTTCCATTTCGCCTTCGGGTG 2851411 29 100.0 32 ............................. TTAATACTCTCCAAACATTACGCAATCAGGCC 2851350 29 100.0 32 ............................. CAGCATACGTATTAGGTACCAGGCTGATCGAA 2851289 29 100.0 32 ............................. TTGTGCGGCAACGCCCGTTTTTATCGGTGGGC 2851228 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 2851167 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 2851106 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2851045 29 100.0 32 ............................. GTGATTCGCCAGTTCGCCCGAACGGTGATCGC 2850984 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 2850923 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2850862 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 2850801 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 2850740 29 93.1 0 A.........T.................. | A [2850713] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTTCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATGAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2869918-2868730 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019410.1 Salmonella enterica subsp. enterica serovar Hillingdon str. N1529-D3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2869917 29 100.0 32 ............................. ACTTATCTAAAAACTGGATAAGTGGTGGGCCA 2869856 29 100.0 32 ............................. GCGACGACGAATATCAGGTTATCGTCAGCGGG 2869795 29 100.0 32 ............................. TTAATGACGTCGCCCTCGCCATCTGCGACCTC 2869734 29 100.0 32 ............................. GCAACAAAAACGCCGGGCATAACCAGGCGAAA 2869673 29 100.0 32 ............................. GTACGTCGAAGTATGCTGAATTACAGGAAGGC 2869612 29 100.0 32 ............................. GCTTTTTTCCCGGTAATCGGCGGTAAACCAAA 2869551 29 100.0 32 ............................. TGATATAGCCATTTGTAAACGCTCGCTTGGGA 2869490 29 100.0 32 ............................. CTTTCCTGCGTCCAGATGAGTGAATATCTCAT 2869429 29 100.0 32 ............................. GTGTTGAATACAGCCGAACCGATCACGCTGAA 2869368 29 100.0 33 ............................. GCAGTCAATGTAGGAATAAAACTCGCAATGAGC 2869306 29 100.0 32 ............................. GTCCGTTCGTCGGCAGGCGTGGTCAGGTCAGG 2869245 29 100.0 32 ............................. CGAGATGTCGCGGTCACTGGCTTTAATCCAGC 2869184 29 100.0 32 ............................. ACCGTCAGAACCCTCACACCACGCTTCGTGCT 2869123 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 2869062 29 96.6 32 ..........T.................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 2869001 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 2868940 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 2868879 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 2868818 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 2868757 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //