Array 1 102612-105747 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXN01000053.1 Bifidobacterium breve strain BR-10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 102612 33 100.0 36 ................................. CCCACAGAACCGGCACGAGAGAACTCGACGAAGAAC 102681 33 100.0 34 ................................. GGATGCGGTCGAGTACGCCATCGGGGATACCGCC 102748 33 100.0 34 ................................. AACAACTCCCAAATCCTCAACATGATTCGCAACG 102815 33 100.0 35 ................................. GAGATTACGCCTGAATATGTGTCGGTGAGTGGCCC 102883 33 100.0 33 ................................. CTGTTTGGCGATGTCGGTCTTGTTGGCCCGAGC 102949 33 100.0 34 ................................. CTCTATGGACGGTAAAATGGCGCTCTATAACGCC 103016 33 100.0 36 ................................. TCCTTATCAGTGGTTGTTTGTAGTAGTTGGTTTGCT 103085 33 100.0 35 ................................. GATGCTTACGGTGCTGTTGTTGCTCGCATAGTTCG 103153 33 100.0 35 ................................. GCGTCACTCCAACTGCCGTCGCTCTCGCTCACATA 103221 33 100.0 34 ................................. AAAACGTGCGCGCCAAGCGCGTTGCGCGCGGCGG 103288 33 100.0 34 ................................. GATAACAAGGAGTAGTGATGACCGCAACCAACCA 103355 33 100.0 35 ................................. CCATCGCCCACGCTCGGTGTGCCCTGACCTTGGTC 103423 33 100.0 35 ................................. CGTAGGAACGTGCCGAATTTGGATGTGGCCACCTT 103491 33 100.0 35 ................................. CATGTACAAGGACGCGAACGGCATCGTCCGCGTCG 103559 33 100.0 33 ................................. TCCATAGCTATGGCAGTTACTGAATATTGTATC 103625 33 100.0 36 ................................. CGCCACTGGACAAAACGGATTATCACCGAATGCGCC 103694 33 100.0 34 ................................. CCGTACGGCAGGTAGTCGCCTTCCTTGTCCTGCT 103761 33 100.0 34 ................................. ATGAACGGCAGGTGGATCACGTCGGCGTCGGTGT 103828 33 100.0 35 ................................. CAGGCAACGCAGGAAATCGACCCCGCTCTTGCCGG 103896 33 100.0 37 ................................. TCGGAAGTCGGCCAACTGCGTCTTGTCCCACAAGAGT 103966 33 100.0 36 ................................. AGTGAACCCGCATGGCAGACCCCGCCGCCGTCGTAA 104035 33 100.0 34 ................................. CATCTCACGTATTTCGCCCACTGTATAGCGCGCC 104102 33 100.0 35 ................................. AGGTTCGCGAGCTTGGTCTGCACCGTACGCTTCGA 104170 33 100.0 36 ................................. ACCATCGCGTCCACACCGAGAATCTGGAACCGCCAG 104239 33 100.0 34 ................................. GCGATGATACCGGCGTTGCGCAGGCTGGCCAGCA 104306 33 100.0 34 ................................. ATCCAAGCCAACCACCAGCACGCCGGTCGGGGAG 104373 33 100.0 35 ................................. ACCTGCCCGGCCTGAGATAGGGCGATAAAGTACCC 104441 33 100.0 34 ................................. ACCGTGCCCGACACGGCCGGCACGCTGGAATACG 104508 33 100.0 33 ................................. ATGACAATGCTAGATATTCAGCCGAGCGCTACA 104574 33 100.0 35 ................................. ACTTCGGCCCCACCGAACCACCCAGCCCCACACCA 104642 33 100.0 33 ................................. GCTGGAATACGGTCGCCAGACCCTGCACGTCAA 104708 33 100.0 36 ................................. CTCGAAGACGCAATCGGGGTCGAACGTCTCGGCCCC 104777 33 100.0 32 ................................. ACTCTACGGCATCCCAGCGTAATGATGATTCA 104842 33 100.0 32 ................................. GCCATTTTCGGGACGCCGGACACGTGGAACCA 104907 33 100.0 34 ................................. AACTACAGGGCGACAGCCTCGTATACCACAGTGG 104974 33 100.0 33 ................................. AGTAGCGAATAGGCGGTATTGTAGCGTGTCCCG 105040 33 100.0 35 ................................. TCGGAGGCAGGGTGGTTGCCATGCCAAAACACAGG 105108 33 100.0 34 ................................. CGCCGAGAAGCCCTCGGCATCTGGGGCGAACACG 105175 33 100.0 34 ................................. TCGTTGAGGTCGAGTATGCCCTGGTTGAACTTGG 105242 33 100.0 33 ................................. AGATATGGCGGACCTTTGCCGTTAGACCGCCAG 105308 33 100.0 34 ................................. TGCGCCTCCATGGTGCGCTGGCCGATCATCACGG 105375 33 100.0 34 ................................. CTTGGCGAGCGCGGCCTGTGTCTTGCGATGCCGT 105442 33 100.0 35 ................................. GCGCTAATCCCCAGTGGGGTAATGGTGATTGGATA 105510 33 100.0 36 ................................. TCCACTTGGATTGCATCAGCCGTGACACCGACCCGG 105579 33 100.0 35 ................................. CAAGTTCGTGAAAACATTACAAGCGGATACCGATT 105647 33 100.0 35 ................................. CCGATTCCATCCCCGAGGGTATCGCGCGCGACGCC 105715 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 47 33 100.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCTGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAATGACGATCTGCGATACAATCAGTGTTGAAAATAGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TAGCATCTGTTTTTGTTCAATAGGAAGTTGAGGTTTTAGTCACGAAGGTTTTTCGGGTTTAGGCGGAAAGGCATGCCGGCCACCCGTGGGCCTTAGCCTGATGGTGCTTCTAGTTCCATTCGGGAAAGGTCCGGAAAGGCAATGATCAGCATGCCCCAAATGCAGTCTATCCGTTCGCGTCGCAGGAACGGTGAGTCCATCGCCTCGATAGCGCGCAGCGAGAGGGTCAGCGAGCCGACCGTGCGCAAGTATCTGAGGGTCGACGGCCTATCGGCCGGGCCGCCCGTGAGGCGACGTCGTGGTTCGGTGATCGACGAGTGGCTGCCCATGATCGAGGGCATGCTCGCCGAGGACCGGGAGACCTGGCGCAAGCAGCGGCATACCGCGACCCGCATCCATGAGCGGTTGCGCGACGAGTACGGGGCCGGGGTGTCGTTGTCGACGGTGACCCGGACCGTGGCGCGGCTCAGGCGCGAGGCCGCGGCGGAGCGGGAGGCCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 108230-108941 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCXN01000053.1 Bifidobacterium breve strain BR-10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 108230 33 100.0 35 ................................. ACCAGTACGTGAGCGAAGCCAACGGCTCATATTCC 108298 33 100.0 35 ................................. CGTGAAGAAATGCGATTGGCATCCAAGGGAATGCC 108366 33 100.0 34 ................................. AAAAAAGAAAACCTCTATTGGGGTTCGACCGTGC 108433 33 100.0 33 ................................. TCACGGGCGATGAACTGCTTGTCGGTGCCGTCC 108499 33 100.0 34 ................................. ACGTCCGTGACCGTCACGTTCGCGGCGTCACCAT 108566 33 100.0 36 ................................. ACCTCAGTAGACGTAGCCGTTGCGGCGGGCGCGCGC 108635 33 100.0 36 ................................. GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 108704 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGAGGGACA 108772 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 108840 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 108909 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 11 33 98.1 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AGCAAGGCAGGAGCGTGAGGTTCCGGCAGACCGCGGAGCTCGTGCTCCAGCCCGGCAAGGCCAAACGCGACGGCGCCCTCGACAGCCTGCTCGGGGACCTCGCCCGTGCCGACCTGATCATCCTCGACGAGTTCGGCTACGTGCCCTTCGACATCGACGGGGCCCGTCTCCTCTACCAGATCATCGCCGGCAGCTACGAACGTCGCAGCATCATCTTCACCACGAACATCGAGTTCAGCAAATGGGGGACGATCTTCGCCGACGACAAACTCGCCGCCGCGATCATCGACCGCATCGTCCACCACGGACGCCTCATCGAATTCACCGGCCCCAGCCGACGCGTCAGCCAAGCCCTCATGTTCGGCAAGACGGACAACCAGTAAAACAAACCACCGGCCGGCACTCCTCATGCCGAAAACCGAAAAAAATTAGTGACGAAACACGAAACACCGACTTGACTAAAAACAAGCATCGCCGCGACCGCCGCCGAAGTGGCGCAA # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATATCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGTAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //