Array 1 75141-78660 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOS01000003.1 Candidatus Scalindua japonica strain husup-a2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 75141 30 100.0 38 .............................. GATTTCCCTTGATGAACATTTTTTGCGCTACTACCTCC 75209 30 100.0 36 .............................. AATTATTAGAAAGGAAATTAAAAAAATATGATTAAT 75275 30 100.0 36 .............................. AATTATTAGAAAGGAAATTAAAAAAATATGATTAAT 75341 30 100.0 36 .............................. CTAGAAGCCAAAATACCTGTTCTTCTGTATCTTTCC 75407 30 100.0 35 .............................. TTTTTAAACTATTATTTTTTTCAAATTGGGTGTCG 75472 30 100.0 36 .............................. ATTGGTCTAGGTGACAGATAAATTAATAAATTTTAT 75538 30 100.0 36 .............................. TCCGCTATGGCGGTAACTCTTGCGATTGGAGGATTG 75604 30 100.0 35 .............................. GAATCAGGCACAACTCCACAGGGAAATCTAGCAGC 75669 30 100.0 35 .............................. GGGGTTCTGTGATATCGGCAATTGAATTAAAACGT 75734 30 100.0 35 .............................. GAGATTCGGTACACAAGCTATTGTCAGACCGCATC 75799 30 100.0 35 .............................. TTGCGCTAGTGCGCATTTAACGTACCGTGATAATA 75864 30 100.0 36 .............................. GTTATAGAAATCTAATCGTTGCCGCCACAGGAACTG 75930 30 100.0 36 .............................. TTATAAATAAATTATCAAGTGAAAAACAAAATAAAC 75996 30 100.0 37 .............................. CAAGCAGATCACCGCGCCTGTCACCTGTAAAGGATTG 76063 30 100.0 37 .............................. ATGGAATGTTCCTAGAGATGAAAGACACGAAAAAAAC 76130 30 100.0 35 .............................. CGATATTTAACAACGAAGATTTTGAACAATCAGCA 76195 30 100.0 36 .............................. GTGTTTTAACTTTTGTTATAGTTGCTGCATAATCTA 76261 30 100.0 35 .............................. CACACAGACCGTTTATAATATTTTCTACCTTTGCC 76326 30 100.0 35 .............................. CCCACTGTTTAAGCTTACCCGGCTTAAACTCAAGC 76391 30 100.0 36 .............................. CACATTATTTCACGTGCCATTATTACCCTCCTTACA 76457 30 100.0 35 .............................. AGCTGTGATTCTCTACCATGACATGTCTGTTTTGG 76522 30 100.0 36 .............................. AGCTACAGTCGTAGCGACATCGGCTAATGGTTATGA 76588 30 100.0 35 .............................. TGCCGTAGTTCACGACTATTGTTCCGGCAAAGTAG 76653 30 100.0 36 .............................. AAACTACAATGTCTGGCTGGATATCATACCTGGTAC 76719 30 100.0 35 .............................. TTCGCATCTGTTTTGCCTGACATGTATCTTGACAG 76784 30 100.0 36 .............................. TCACGTACAAACAGTCGCGCAGAGAGTATCCGAAGG 76850 30 100.0 36 .............................. AAGGTACTGTGGGAAGAGGAAGATTGCACGGGTCTG 76916 30 100.0 36 .............................. ATAGTACGATTCATAAAAGTAACACGAATCTTGCAA 76982 30 100.0 37 .............................. TCAAGGTTGACGGAAACAGGCAAAGAGTGAAGGGAAG 77049 30 100.0 36 .............................. TTAGCGGTTCCGTCGGAATATATTTCTTTGTTTAAC 77115 30 100.0 36 .............................. TTTTATGGAGATAAAGAAAAAGAATTTGCTCTTATG 77181 30 100.0 36 .............................. TCTTTTAACAGAACTCATGGTCATAAGACTGCATTC 77247 30 100.0 36 .............................. CGAAACAGCATCCGCAAAAGCTAATTCAGTTTTAAA 77313 30 100.0 37 .............................. ATCTTTCTTCAGTATTGTCATCTAGTTTTTCTAATAC 77380 30 100.0 35 .............................. CAGTTAAAAAAATTAGTTTTTAGGGTAAAAATTCC 77445 30 100.0 37 .............................. AGTAAGGCAATTGGTCTAGGTTTTTTTTGAAAGGAAA 77512 30 100.0 36 .............................. CAGATTAATACTGGATCGCATCCTTCGATACAACCT 77578 30 100.0 35 .............................. ATCTTGGAGGTTTCTTAAACTTAAATAAAAAGAAA 77643 30 100.0 36 .............................. AAATTTACAAGATTCTCCAATTATTAATACAGATGA 77709 30 100.0 36 .............................. CAAGTAAATATAAGTCAAGTCGAACAAACTTCAGAA 77775 30 100.0 35 .............................. GGTTATTTGATACCTATATTTTGCGACGAAGCTCT 77840 30 100.0 36 .............................. AGATTTTTTCAGAATAATCATTTTTTCCACTTTTTT 77906 30 100.0 36 .............................. ATGGGAAAACAGTAAGAGTATATCAAGACAAATAAT 77972 30 100.0 37 .............................. ATAAGCTTCTCTTTTGCAGCTTGTACGTAATAGTCTC 78039 30 100.0 36 .............................. AGATATTGCAGAAGAAATGCTGGACCTAGAAAGTCA 78105 30 100.0 36 .............................. ATTTGTAAAGTGACAAATATCTTCCTGTCTAATATT 78171 30 100.0 35 .............................. AAGCTACCAGGATCATATATTGTAAGGCATACCAG 78236 30 100.0 36 .............................. ATATCCTTGATTGTTGATTCTGTGCTGAATTGCCAA 78302 30 100.0 36 .............................. CCTGTATTGCCAAGAAATGTGTTGGCTTTTGCTATG 78368 30 100.0 36 .............................. ATCGCTCTACCAAACTTCGTCTCTTTGTATAAAACA 78434 30 100.0 37 .............................. CGCTAGGGATAACCTGCCACCCTAGCGTGTGTACTCT 78501 30 100.0 35 .............................. ATACTTGCCACCTTGATAAATGTCTCTCCTGTCTC 78566 30 100.0 35 .............................. ATACTAAAAGTGTTCTTGTTTGGCATCGCCCATTT 78631 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 54 30 100.0 36 GTTTTTATATTACCTATGAGGAATTGAAAC # Left flank : TAAGCTATAGAAGGCTCATGAGGCTGGAACTTTATAAACTGGAGAAACATCTCATGGGTGAGGATCAATACAAACCCTTTGTTATGGAGTGGTAATGTTTGTAATTCTTTATTATGATGTTAATAGTAAGCGCTGTGGAAAAATGCTTAAGACCTGCAGGAAACATCTCCAGTGGGTACAGAACTCGGTTTTTGAAGGTGAAATGTCTGATGCCGGATATGAAAAAATGATTTTAGAGTTGAGAAAAATTATTAAAGTAGATAGCGAAGACTCAATTGTTGTTTATAAATTCAGGCACATGAAGTACTACGACAGATGTGTCTATGGTACGGATAAAAAAGAGGATATTAAATTCATCTAATATCTGTCGACCTTAAATAGTGTAAAAAAGGTTGAGGACCGACAGAAACAGACCATAATCTAATGGTTTTATTGATCAATTTGCTATGTGACATTATAACATATAAGCAAAAATCTGCCGTATCCCGCTTAAAAGGCGG # Right flank : CAATATTCAACGAGATCATACTGCTTCTTAAAGAGTACTCTTGACATGGAATTTTCTCAGGGATACAATTGGGTTTGTTCATTGATCAGAGTGATAGTTGATGAGAGAGAATTTCCTCTGTGACGAGCATGTATATCAGTATATGATATTTCTTCATAAAATCTTCGTTGTAAACTCTATCCATCTTATGTGACGGCTACTCAATGGAAACATAGATGTTTTTTTGTATAATAGTAATGCTTAGTCAGATTGTTGTTTGTTAAAGGAAGTAATAAAATTGAGAATAGTTTCGATAAAGAGGTTTCACGTAAGTACTGTTCGGGATTTGGCATAATAGAGGTAGGCAGATGGTTTATAGCTGCAGATAATCCGAAAGGGGCTTTTGGGGAGGCAAGCTGACGATAATCTTTCAGGCAGACAGCACAGGCTGATAGGGAGGATATCCTTTACGAAAGGTTGGATAAATGATAAATAGATTGATATTGTGTTAAATGAACCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATATTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 411145-410805 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAOS01000028.1 Candidatus Scalindua japonica strain husup-a2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 411144 37 100.0 40 ..................................... GATAAATACACTACTGACCTTATTAATTCCCTGTACTACC 411067 37 100.0 39 ..................................... CAGTCGATCTGGTAACTGTTTGATACACTTAGCCATTTC 410991 37 100.0 36 ..................................... AAATAAATCATCAAAAGAAATACCAGTTCTCGTCTT 410918 37 100.0 40 ..................................... GAAACAAAACTTCTTTCGTTCATTCGATCCGACTCTTTGA 410841 37 86.5 0 .....................T.G.........AA.A | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 97.3 39 GTAGGAATACTTGACCTGATGAATAAGGGATTGCGAC # Left flank : GGACTATTATACTTGATCTGGTTTACGGTACATTTTATAGAAGTTTACATGGCATTAATCAGGACTGCAACAATATCTATATGGGTGTAATTGGTGTAATTAATCCTAAAGTCCTCCTGGTTTTCTTCCCACTTGCACTACTCATAGGTATTTTTGTCCAGATCATATGGGAAGACAAATCAATTACACAGCCACTATAACTAAATTAAACAGATTGAATCTTTACACTTTTCATTGCTAATAATTAAAAAAACGTCATTCTAACGAAAAAAAACGGAAACCAGGGATAACTCTTATATCCACAATATGTTAACGGAACTTTTAAAAACTGGTAAAAAGGGGGTAGGTTACAGGAAAATCGTAACATGATAACTGATAGGTGTTTATGAGCATTTTATTAAATATTTACAGACAATTTTGAGGTGAAATGATTACAGATTGGATAGGTTACAGGAAATGGCCTTGTAAGTGCATGTTGGAAGAGGTGTTAGAAGGGGTAC # Right flank : CAGTGGTCAGAAAAAGAATTAAAACGTTACCGATATCTGAAAACTGGTATCTGAGAATGGTCTGTATGTGTAATTAAAACATCAAAAAGAAATGTGATACCGTATCTGTAGGGGCAGACCCGTGTGTCTGCCCCATGGATAAACACATGGGCCACGAAAAGGGGAGACATATGGGTGACAAAAAAGGACAGACACATGGGTCTGCCCTTACAAGGGGGAAATTATTTTGAAAAACAAATGAAACCGTTTCAAATGAAATGTCTGGAATTGGTACCTTGGGCTACCATGGCTTTAACGGTACTTGGCTCACATTTTGCCGCCGATGCCGTAATGGAAACTGTCGCAGAATGGTCTCATGGGAGTGAAACCGCCGTTTTTATTACAAAGATCTGTTATCTTGTATTTTTCATAGGAATGGTATATTTATTGATCCGACAAAAGGACAATATATTTCATCCCCGTACAAGATATATTTCAAACGAAGAGGCCGAGGAGAGAGA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAATACTTGACCTGATGAATAAGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //