Array 1 1378810-1379833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNF020000001.1 Clostridium sp. M14 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1378810 30 100.0 35 .............................. CTTTATATTGTAATTGATGAACTTTTAGTTCTTTG 1378875 30 100.0 36 .............................. AAACCTAAAAGACCTTCTCAAAACGATTAATTTAAA 1378941 30 100.0 36 .............................. TAAATTCTCTTCTTGATTTTATTTACTTCTATAAAG 1379007 30 100.0 37 .............................. TTTATGCAATATAAAGTTGATGATAATGGTAAATTAG 1379074 30 100.0 37 .............................. AAGATAACTTTTCCACTACCTTGTAACCAGTTCGCAA 1379141 30 100.0 35 .............................. CAAGAATTAGCTACTGCCCTTGCTGAAACTCAAAA 1379206 30 100.0 38 .............................. ACAGTTGGAGTCTCTTTCATATCTCTTTCTACATCAGC 1379274 30 100.0 36 .............................. TAAAAAAAATAGCAGCAGCATATTCAGAAGGATCTG 1379340 30 100.0 36 .............................. TAAAATATCTTTGTTAAAATTGTTGCAAAAGAACAT 1379406 30 100.0 35 .............................. TTATATGCTAGTAAATCAAAAGTGTCAATATTTTA 1379471 30 100.0 36 .............................. ATACTTTTGAGCATTTAAATCAGGCTTACAATATTT 1379537 30 96.7 37 ........T..................... AGATACAAGAAAGAGATGGGGTAATTCAAAAACAACG 1379604 30 100.0 34 .............................. ATAGATTTTAAAATTCCAAAAGGAGTAGATAAGG 1379668 30 100.0 38 .............................. TTTTTAACACGCTCCTTTATTATTTTATTTTTACTATA 1379736 30 100.0 38 .............................. GGATAAGTAATCTTGGTCTTAAAATCCCTGTACCAGAA 1379804 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.6 36 GTTTTAATCTAACCATATTGGAATGTAAAT # Left flank : TGGTGGTAGGTGATATATTAAATGTATGTAGTTTTAGTATATGATATAAGTGGTGATGAAAATGGGCAAAGAATATTAGGGCGTGTTTTTAAAATATGCAAGAAATATTTAACTCATATACAAAATTCTGTTTTTGAAGGAGAGCTAAGTAATGGGCAAATTGCACAACTGAAAGCAGAGTTGAATAATTTTATTAGAAAAGATATTGATTCTGTGATAATATTTAAAAGTAGGAGTCAAAAATGGCTTGATAAAGAATTTTGGGGTAAAAAAGATGATGCAACATCCAATTTCTTTTAAAGTTATTTAATAATATATTTTATTGTCGATATCAGATAATGCTAAATTTACGGGGGAACGACAATGTATTGGTGTTAGTAGTGTTTAGAAGGTTATTTTGTAAAATGTATGTTAATTATAAAGTTAAATATAATTAATTTATGTACATTGACAATTTTTATGCTAAGACCGTTGAAATTACTTGTTTAGTATAGACACGT # Right flank : AAAGAAGTGTTGCATTAATTAATGGCAACACTTCTTTTTTATATATTAATGAATAAAACCTTGAATTAAGAAGTAAACAAGGAAGATAGCAGATGTTATGCACATAGTTACTGATAAATCTTTCTTTTTATTACTAAATAATTTACATATAGGATATAAAATAAATCCAAAGGCTATTCCATCTACAATACTATAAGTTAATGGAATTAATATTATTACTATAAATGCTGGTATTAACTCTGTTAAATCATCAAAGTCTAAATGTTTTAAATTTTGGAACATTAAACTTCCTATGATAATAAGAATTGGAGCTAATGCTGCATTTGGAATTATTGATATAAATGGTATGAAGAATAATGAAACTAAAAATAATAATCCAGTTATTATTGATGTTAATCCAGTTCTTCCACCAGCGGCAATACCCGCTGCTCCTTCAACAGTAGAAACAGGAGGACAAGTTCCTAAAAATCCATATGCAATAACAGAGAATCCTACTGATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 2141755-2140940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNF020000001.1 Clostridium sp. M14 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2141754 30 100.0 34 .............................. ATGTATTAAGTTCATTTTTAGTGTTAATTGCTGT 2141690 30 100.0 37 .............................. GCAATTAAATTTGGCATTTCAATGTAAGTATAAACTA 2141623 30 100.0 36 .............................. AATGGAACCTAATCTATCTATTATTACTGTATATAA 2141557 30 100.0 35 .............................. GGAGTTAGGAGAATTGAAGTTAAATCACCAATTCA 2141492 30 100.0 34 .............................. TTCTCGGCTCTAATACACTATCTATATTAATAGA 2141428 30 100.0 34 .............................. TTCTCGGCTCTAATACACTATCTATATTAATAGA 2141364 30 100.0 37 .............................. AGTGATATAGATAATAGTTCAAATAGTTCTGCGGAAG 2141297 30 100.0 35 .............................. TGTATGCCAATTACTCTTGCTAACTTTCCAACTTT 2141232 30 100.0 36 .............................. TAATCAAATGAATGAGTATTCATAAATGGTTTTATT 2141166 30 100.0 35 .............................. TCAGTACTTTCATTCATGTAATCTCTATATTTTTC 2141101 30 100.0 37 .............................. GAAGATGAAAAATTAGATAAAGACATAGAATTAACAA 2141034 30 100.0 35 .............................. TAAGAGCATTAGAAATTATAACAGTTCTAATATAG 2140969 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTTAACCTTAACATGAGATGTATTTAAAT # Left flank : AAAGGTAAAGAAGAAGGAGAAAAAATTAAGGCGCTAGAAATAGCAAAAAATTTACTAGATATCTTAGATAATAAAACAATAGCAATAAAAACTGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAAGTAATTAGTGTTTTTTAGAAACACTTAGGATTTAGTTGTCGTTGACAAAGAACACAATTTAAAGAGTTGTAATGATTTTAAATTGTTATGGCTCTTTATTTTTGTTCAAAAAAATATAGATGTTAAGCTCAAATTTACTTTAAGAACTGTAAAAATAAAGTAAGTTAGCTATAATATTAAGCATTCTATTTTACCAGCCATAAATTTATATAAAATCCATTAATCCATTGAAATTACAGGGCTTCAGTAATTTTTAATACGGTTTCTAAAAATTTCACAAACAGCTGGGAAAGTTTCTTTGAAACCTTGAAGTTTCAATGCCTTAATGGTATTATTGATTTTAGAGAATGGCTATTTTACTGTG # Right flank : ACATTACAAACATCAGCACTGAATGTGTTGGTGTTTTTTAATTTTTATATGGAAAAATATAGAGTATAATAGAATTTGCAAGGAAATTTATAGAAATATAGTTTATATTAGATTACTATAAATAATAACTTAGTGATGGGGGGATTAATAATGAAATTTAATAAGAAGGGGAAGGTTATTGCTACTATTGTACTTGTAATTGCAGTAGTTATAGGAATATTTGCTTTTAAAATATTTCATAGAGTAACTAACTCTCCTATGATTAAAAGTGAAGATCAAAATGAAAAATTTATAGCAGATATTGAGTTCTTAAAAAAGGAATTACCTAAAAAGCATAAGAATTTATTTTTTTCTAAATCAAAAGAAGAATTTAATGATGAGATTGACTCACTAATTAACAATGTTTCAAGATATAGTGATAAAGAAATAAAGGGTGAACTTGCAAAAATAATAGTATCTATTAATGACAGTCATACTAATGTAGATATTATGGGTTCACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2143900-2143154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNF020000001.1 Clostridium sp. M14 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2143899 30 100.0 36 .............................. AATGCAATTTGTGTTGCACCTGCGCTCTGTTTCATT 2143833 30 100.0 34 .............................. TCTTGAGTAATTCCAATGTAAGGATATCTATTGG 2143769 30 100.0 35 .............................. GCAATTAAATTTGGCATTTCAATGTAAGTATAAAC 2143704 30 100.0 37 .............................. CCAAGAGTAAACATTTTCCCCATTTCCTCTTGTGAAC 2143637 30 100.0 36 .............................. GTTGTTTTAGATAAGTCTTGCATTTTAACTTTATAA 2143571 30 100.0 34 .............................. CTATAAAAAGCTTTATTTTGCTGTTCGATATTGT 2143507 30 100.0 35 .............................. ACCATAATAGTTACTTTTCTACTATCTAATAAATA 2143442 30 100.0 35 .............................. AGTAAAGAATGCAGTAATATGAAAGCACCAATTGA 2143377 30 100.0 36 .............................. TATCCAAGAGCATCAGCTATTTGCTTCATTTCACTT 2143311 30 100.0 34 .............................. GTCACTGCTATAGGTACTGCATCGACCACTTCTC 2143247 30 100.0 34 .............................. TAGGGAAAGTTACTGGAACAGGCACTGAAGTATT 2143183 30 93.3 0 ........................G.T... | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 99.4 35 GATTAACCTTAACATGAGATGTATTTAAAT # Left flank : GTAGAGCACATGACTTTTAATCATGGTGTCCCGGGTTCGATTCCCGGGTGAGCCACCAAAATATTGTCCAAAGTAGAAATGTAAATTTTTACTTTGGATTTTTTTATTTTAGAAGAATAAAATCAAATACAATATTGATTAGATATTTTGGATAATAAAACAATAGCAATAAAAATTGGATTAACAGAAGAAGAAATAGATGCTCTTAGAAAAAAAGAAAGTAATTAGTGTTTTTAGAAGTACTTAGGATTTAATTATCTTACAGTGTTTTTTCTGGGCAATGCTATTAAAGTGTATAACTTAACTAGAATACTAAACATTATATTTTACCACCAGTAAATTTATATGAAACGCCTTAATCAATTGAAATTACAGGGCTAAAGTGACCCTTGAAAATTTTTGTTAAAATTTCACAAACGGCTGGTAAAGTTTCCTTGAAACCTTGAAGTTTCAATGCCTTAGTGGTATTCTTGATTTAAGAGAATGGCTATTTTACTGTG # Right flank : CCCTATAATTTTAAAAATCATTTATAAATTCAAAATAATAATATATAATATATATAAGGAAATAATACAAATGATAGTGATAAATAAGAAGGGCGTGAAATAGCTTGATTAAAAAGCATGATTTTGATGCGGCATGGAAATCAATATTAGAAGCCTTTGAAATAGAAATAGTAGAGCTACTTTTTCCAGAGATATTTGATAATATTGCATGGGAACTTGGAACTGAAAGTCTAGATCAAGAACTACAAGAAATTCAAAAGGATATTTTTGATAAAGATAGTGCAGAAAAGATAATATCAGATAAGATAATAAAGGTTAGATTAAAAGATAAAGGAAGTAAAATATTATTTATTCACGTAGAAGTGCAGAGCTATAGTAGCGATGAAGCTGTATTTGGCGAAAGAATGTTTAGATATTTTTATAGAATTTGGGATAAATTCAGATATAAATACAAAGATAAATCAGAAATAGTTGCTGCGGCAATATACACTTACAAGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 4 2182937-2177518 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNF020000001.1 Clostridium sp. M14 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2182936 29 100.0 37 ............................. TCTGCTATTACAGGTTTGTAGGTTTCTGCACATTTAC 2182870 29 100.0 38 ............................. TTCTTCCAAAGGAGCTTTTATTCTTTTTAAATCCTTAC 2182803 29 100.0 37 ............................. TATTCTATAGTCAGTCTTCTAATAGTTTTATGAACTA 2182737 29 100.0 37 ............................. TACTCTGCATCAAACAGACCTGGAACACATTCTAAAG 2182671 29 100.0 37 ............................. TCGTGAATGGCTATAGATTTATTACATTTTGTAAATT 2182605 29 100.0 36 ............................. CTAAAGGTATTCTATAGTTAGGATTGACGGAAACAG 2182540 29 100.0 35 ............................. TGTTTTTATTGGAGATACTCCTGCCATAGAAACTC 2182476 29 100.0 36 ............................. TCCTCTTCACCACAATAGTTCAAATTTTCTTTTATT 2182411 29 100.0 36 ............................. ATTAGTTATAAAATTCATAGGGATAATTAATTTCAG 2182346 29 100.0 37 ............................. TGTCTAATTAATTTCGTATTCGAATACTATAAATCTT 2182280 29 100.0 38 ............................. AAGAATATTGATGATGGTAGGGAAGCTATATTACACTC 2182213 29 100.0 37 ............................. AGAACAAAGAGGACACAATCTATCTTTGCAGAAATTA 2182147 29 100.0 35 ............................. GTCATTTGCACTTTTTAACGTAGTTGTTAGTTATA 2182083 29 100.0 37 ............................. TTTTAAAAAGGATATGAAGATTGCTTTATGTATATAA 2182017 29 100.0 37 ............................. AAGAGTTGAAAATGGACGATATGGTTGATGGAGATTT 2181951 29 96.6 36 ...................T......... TATTTTGCTATTGCCAGGTAACCGAAGGGCTTTAGT 2181886 29 100.0 37 ............................. GGAGTAAGAATTGAAGAAACTGAAACTATTACAGTTA 2181820 29 100.0 38 ............................. TTTTAATCCTAAACTAAAAGGATTCTTTTTGGCATTTT 2181753 29 100.0 37 ............................. ATTAAATAAGCATCCCCTATAAGCAATTTAATACACT 2181687 29 100.0 37 ............................. GCAAACATTTCATTTGCTTTAGCTTGTATATCTGCTT 2181621 29 100.0 36 ............................. TTGCCGAGTTTATCCAAAATGGGTCTTTAGGATTAG 2181556 29 100.0 36 ............................. TAGTAATTCAAGGGTTAGAAAGAAGACATACAATGG 2181491 29 100.0 38 ............................. TTTAGGTTTGCCATCACTAAATACATACATAGGAGCTG 2181424 29 100.0 36 ............................. AGTGTATGGACGAGAAAATGGGAAAGCAATATTAAA 2181359 29 100.0 37 ............................. TAAAATATCTTTGTTAAAATTGTTGCAAAAGAACATT 2181293 29 100.0 36 ............................. TTAGTTACAAAACTTTTTATTGCTTTTTCAGTTTCA 2181228 29 100.0 37 ............................. CTTCTTGTAGGAGCAATAACACATAATGTTAAATTCC 2181162 29 100.0 38 ............................. AAGCTTTAGTAAAAGAATAAAAAAACTTTCGCATGCAC 2181095 29 100.0 37 ............................. AATTCACTCATTTGTTTTATTTTTTCATCTGCTACTT 2181029 29 100.0 37 ............................. ATCGACAATGAATGTAAATATATTGAAATTTTTCGAC 2180963 29 100.0 37 ............................. TGTAATGACATACCTGAATTTAGTAAATGCGTGGCTT 2180897 29 100.0 36 ............................. AATCCATCTGTAGTTATAGTTACATCTGTTTCATTT 2180832 29 100.0 37 ............................. TTAAAATTATTTTTCAATTTAATATCACCCTTTAATA 2180766 29 100.0 34 ............................. TTATACAAATTATCTGTATATAAATAAAATTCTC 2180703 29 100.0 37 ............................. TATGCTAAACAATTCGTAACATGGTTTACTGCTAAAA 2180637 29 100.0 38 ............................. CATAATCAGACATTTGAAAAAGTGAGGTGTTAACTATA 2180570 29 93.1 36 ...........................TC ACCTTAGGTTATAAAACTTCTTTTTCCTTGCATCAT 2180505 29 100.0 37 ............................. CATAGAATCAGCAATATTTTCAACCAATACTTGTTTT 2180439 29 100.0 36 ............................. TCTTCTTTTTCTGTAGCATCATCTTTATGGAAGTTA 2180374 29 100.0 37 ............................. TTGATTAAAGGAACGTTAGGATCAGGAAAAACTGCAA 2180308 29 100.0 37 ............................. TAGCTCCACCTACTGCAACTGCTAAAATACCTAAAAA 2180242 29 100.0 37 ............................. AGAACATAAAGGACATAACCTATCTTTACAAAAATTA 2180176 29 100.0 36 ............................. GCAAACTGGAACTCATACTCTTTTTCACTTGAACTA 2180111 29 100.0 37 ............................. TTGGATATGTTGTTATTGTTTCAACTCCTGCATAAGC 2180045 29 100.0 37 ............................. TCTATTCCTGGAGAAGGAGATGGAGGTATAAGTATTC 2179979 29 100.0 36 ............................. AATTCCAAATAAAATTGTGCCATACCTTCATAAATT 2179914 29 100.0 36 ............................. TATAGATTTCTTTTTTTAACTTTAACTGTTAAAAAT 2179849 29 100.0 37 ............................. AAAGGAATACTTTATAGAACAGTAGATGTAACATATG 2179783 29 100.0 37 ............................. TTGTGGAATGTTCCACCAAGACCCATTCTTGAGCCAG 2179717 29 100.0 37 ............................. TCAATAAAGCTTCCATAGATGGTGGCAACTCATTTGC 2179651 29 100.0 36 ............................. GATATAAAAATAGTAACAAGTCTTACAGATAAGGCT 2179586 29 100.0 37 ............................. AGAATTGTAATTCAACTTAGATCAATCGGTTTATGGG 2179520 29 100.0 37 ............................. ACATCTAAAAGTATTATATCTTTATCTTTTAGTTGTA 2179454 29 100.0 37 ............................. TATAGTTAGTTTGTCCAGTAACGAAAATTTGAAACTA 2179388 29 100.0 36 ............................. TTATTAGCAACAATTTGGTTTATATCTTCACTTTTC 2179323 29 100.0 38 ............................. GATGATATTGAAATTGATGGAGATTTTGAAGTATTAAG 2179256 29 100.0 38 ............................. TTAAATAGCTAGGCGTAAAAGAAGCTATTACTCTGCGT 2179189 29 100.0 36 ............................. TTCTTTATAATTTATCAAATTAGATCCATCTTCTAA 2179124 29 100.0 36 ............................. TTGTTTTTCAGAGCGACCTAAGTTATACTATATTTG 2179059 29 100.0 37 ............................. AATTGAGAGCCTTCATAACCAGCTTCTACAGTTATTC 2178993 29 100.0 37 ............................. AAAGCCTTAGCTGTTGGAATAACTTTACCCATACTAG 2178927 29 100.0 37 ............................. ACTATAGAAACATGGGAATCTTTATCTAATGCTTTAA 2178861 29 100.0 37 ............................. AAGACGTAAAAGGTGTAATTGCATTATCTAGTTGTAT 2178795 29 100.0 37 ............................. GTTATATCAGCTATTTCAAAAGGCTTTAAATCAATAG 2178729 29 100.0 38 ............................. TAACAAGGCGTTAAACTGTTAGAACATACTTAAAGCAA 2178662 29 100.0 38 ............................. ATTGCAGGACAATTAGGAAATGAAGAAGTTGTGAGAGG 2178595 29 100.0 37 ............................. TCAAGATTAATGCTTTCTATTTTTACAGAAACAATAT 2178529 29 100.0 37 ............................. TTTTGTGAAAACTTTCAAGTATAATTTTCTATTTTGT 2178463 29 100.0 36 ............................. TATTCAGTAGATGGAATCCTAGGCGGGCCTAATGGT 2178398 29 100.0 37 ............................. CTCCAGGAATAGTAACATCTCCCTCTCCCGTACCCTC 2178332 29 96.6 37 ...........G................. AAATTCCAAAAAAGTTCCACACTCTCTTACTCTAAAA 2178266 29 100.0 36 ............................. ATCTCAGCATTGTATGGATCACTATTTAAATTCATT 2178201 29 100.0 36 ............................. AATTCTTTAGCTAATTTAAGAACAATTTCGATGTTT 2178136 29 100.0 36 ............................. GCAAAGGTTAAATTTTTAGTAAAAAAAAGTGCGGTG 2178071 29 100.0 36 ............................. ATTGTAAGCATAAAATCCTGCTGCTGCTAGTCCAAG 2178006 29 100.0 35 ............................. TGACTAAGTATTTTTCAGATGAGATGTATAACTTC 2177942 29 100.0 36 ............................. AAAGCTTTTTCTAGTTTTATTGCTGCTTTTACATTA 2177877 29 100.0 37 ............................. TAGCAATACTTGAAGTGTTTATAATAGTATTATTTGA 2177811 29 100.0 37 ............................. TAGTCATTCCCTTTTCCACAGCTTACGATTGCATATC 2177745 29 100.0 37 ............................. CTCAAATTAAGGACTTAGAAAAGGAACTAGAGAAAGA 2177679 29 100.0 36 ............................. AATATAATAATAGATGGTTTAAAAATAGAAGATTTA 2177614 29 96.6 37 .G........................... GCTAAATTTACACAAGGAGTAGTCTTACCAACTCCTC GG [2177593] 2177546 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 83 29 99.8 37 GTTTTAGATTAACTATAAGGAATGTAAAT # Left flank : TTTAATTGAAAATGAAAAATATAAAGCGTTAAAGGCATGGTGGTAAATGATGTTTGTTATAGTAACTTATGATGTAGGTGAAAAAAGAGTTAGCAAGGTAAGAAAAAAATTGAAGATGTATTTAACATGGACACAAAATTCTGTTTTTGAAGGTGAAATAACAAATGCTAAATTAAAAAAATGTTTATCAGAACTTAGCTTAATATTGGACAAAGATGGAGATTCACTATATATATACAAAGTAAAAAATAATAATAATATAGAAAAAAATGTTGTTGGAGAGTTAAAAAGTTATGATAATATGTTTTTATAAACATAATTGCAGTAAACCCAATTTAATTAAAATTAGGTGTGAATCGTTGAATTTACAAAGCTGAATAGACATTTTACTATATGTTAAAAAATGTTATTGTATATTTACTGCAATTTATATCAAGAAATGTTATAATAAGTACTATAAAATGGCTTAGATAGGAACAATATTTCTACTATTTTTCGGG # Right flank : CAAAATACCCAATTAATATCTGTTCTTCCCCTAGTATTTTTAGTGCAGTTTTAAAGAGGAGATATTTAAGGTGTTTGATTTTTTAATATGGTGACATAGGATATTAGATGGTTTTAGGTTTAATAATAAGAAGCTTTTGGATATAATAGAGATAATACAATTGATTACTATAATGTATAAGTTAAAAAATGGAGGTTTGTTATGAATTTAAAGGCACTACCAATAGGAGTAGATAATTTTGAAAAATTAATAACGAGAGATTATTATTATATAGATAAAACATTATTAATAAAAGATTTACTAGACAATAAAGCAGACGTGAATTTATTTACAAGACCAAGAAGATTCGGAAAAACTTTAAATATGAGTATGCTTCAATATTATTTTGAAAAGAGAGAAGAAAATAATTCTTATCTTTTTGAAAATCTAAATATAATGGAGGCAGGAGAAGAGTATGTTTCTCATATGGGACAGTATCCTGTAATTAATCTTTCTTTGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATAAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 5 2806007-2804187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMNF020000001.1 Clostridium sp. M14 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2806006 36 100.0 30 .................................... TAACAATATGATGGGTAGCGACCAAACGCT 2805940 36 100.0 31 .................................... TATATGAATGAATTAGAAACTATTCAAGAAA 2805873 36 100.0 30 .................................... ATGATGGTACTGATATAGCTTCAGCAAGAG 2805807 36 100.0 30 .................................... AATAGTTTTGTTCACAATATGCAGATAAGG 2805741 36 100.0 30 .................................... ACGAAACTACTAAACAACTATATAAAGCAG 2805675 36 100.0 30 .................................... TACCTACATTCTTTAGCATCTTATATGCTG 2805609 36 100.0 30 .................................... AAACACTTGATTCAAGAAGAGCATTCTATA 2805543 36 100.0 29 .................................... CTTCATTGTCGTAAATACCTGCTTCCCTA 2805478 36 100.0 30 .................................... ATATACAAGTAAAAAGAGTATCGCAGATAC 2805412 36 100.0 30 .................................... TAGCCATTAATTGATTATCACCTCACAATA 2805346 36 100.0 30 .................................... TAATTATTTAAATCAAAACATTCCTCAGGA 2805280 36 100.0 30 .................................... CTGGCAACTGGGGGCTTGCTTGGGAAGGCG 2805214 36 100.0 30 .................................... TTATAATGAAGTCACCTAGAACATTAACTG 2805148 36 100.0 30 .................................... ACAGAGATTGAAGAAGAACGTTTAGAACGC 2805082 36 100.0 30 .................................... ATTAAAAATACAACCTAGTTACCTAGGAGA 2805016 36 100.0 30 .................................... AAGCCTTAAAACATTGTGAGACCGATGAGG 2804950 36 100.0 30 .................................... AAAGAAATTCTAGTGTAAACACTAATAATG 2804884 36 100.0 30 .................................... TTTGATGGTACTATTAGAGATATAAATGGT 2804818 36 100.0 30 .................................... TAGGTAGATGGAATAATGAAGATGGAGAAG 2804752 36 100.0 30 .................................... CTCCACCTTTTTATATGAGTTAACAAAGTT 2804686 36 100.0 30 .................................... GCGAGATTATGGATATGACATTGAGTGTAC 2804620 36 100.0 30 .................................... GCGAGATTATGGATATGACATTGAGTGTAC 2804554 36 100.0 31 .................................... TATCAAGCTGTTATTGAGCCTAATTTAAAGG 2804487 36 100.0 30 .................................... TTGCTGATATTCAATTACAATGTGGAGCAA 2804421 36 100.0 31 .................................... TTTGGAACTACTTGCTATGATTAATCCAGTA 2804354 36 100.0 31 .................................... TATTATCACATGAATTAGCTGAATTAATTGG 2804287 36 100.0 30 .................................... AATCTGTTGGGAATAAGTTTATCTTTTAAG 2804221 35 86.1 0 .................A.........G.A.-...T | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.5 30 GTTTTAGTACTCTGTTAGTTTAAGGTATTGTATAAC # Left flank : TTGTATTTAAAGTTAGTAGGGTATTTTGCCAGTTATGTGGAAGTTTCTAAAAAATTTCTAATTATTTGTAATCATATAGAAAATAGATTAAGTTCATTAGAAAGTAGGAAAATATATAATTTATTAAAAGAATTTCAAGTAAATAATAGTAGGGTAGATGTAATAATTTTAAGTTTAAATGGTGAAAATATAGAATTTACTAAAGGAAATACAGAAATAGTATCTATATTAAATAGGAATAAGCAATTATATATTTATGATTTAGATTCTCTAATAAGAGAGCTTCAATTAAACTATTATAGAGATATAGATAATGAAATTTTAGAAAAATCTTTGTTAGAGGTTATAAAAAAATATAGTAACCTTATATCTGATGAAAATAATGAGAACTTGTATAGCTATAAAGGTATTTCTGCGATAGATAGGGAAATAATAAGGATTTTAAAAGTTTGTTAAGGTTTTAATTATATGTTTGTAATTTGTGATATAATTAATTTGAG # Right flank : GATTCGCTCAATCTTTTTAACCACATCCATTTTTCTTTTAGCAGCAGTAGAGTAACACATATCTTTTAAATTAGAGTAAAGTTTAATTGTATTATTTTTAAAGAAAATAAAATCAACAAGTTCTTGTTCCTCTTCTGTTAGATTTTTAATAGCTGCTTTTAGTATTTTTAAATCACATTGATTACAAAGTATCTCTTCTAAATTTGGATTATTTGAAGGTAGTGTATGTTCAAGATTATCACTTAGTATAAGGGCAGAAGATCCTTCAGAATTATCTCTATTTTTAGATCTTTTTATAAGGTCATTAAGATTATTTTTTATTCCATTGGTAGCATAAGCTACAAATCTATGTTTTTCTAAATTATAAGAATTTAAGCATTTAAATAAATTCTTATAACATTCATTCTCTATATCTTCTTTATCATATCCATGTATAAAGGTTTTTCTTGAAAGGTTTCTTATGAAAGGTCCAAATTCTTCAATTAGTTTCTCTTTAGATA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTTAGTTTAAGGTATTGTATAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //