Array 1 28810-29052 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992408.1 Clostridium sp. ATCC BAA-442 Scaffold1880, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 28810 33 100.0 38 ................................. ATCAGAATAGCTGCATATCTCTTTTGCAGAGTGAAAGG 28881 33 100.0 37 ................................. ATCTTGTTAAGGATAGGCTGCTCACCGATATTGGCAA 28951 33 97.0 36 ................................T ATTCAGTCCCACAAGGATTCTGTTGACCTCCATAAA 29020 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ====================================== ================== 4 33 97.0 37 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAA # Left flank : CTATGAGCAGAAGATCGAGCACTTTGGCTGTAAGCAGACCTACCTTCCAGACGAACCTTTGATTTTGTAGCGTGCGAAGTCCAAGATGACACGCCTTCTCCGGCCGGTTCGCACCCAAAAAGCATAAAGGAAAGCTTAATGGAGCATAGGCGCGTTTGTTTTTGTATGCTCAGCCTTCTTCCCCTTGTGCAAATAAGCAAATTGAGCCAAGCAAACTCCCTGCTCTTTGGTAAAGTTTGCTGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTTGAGGACATACCGAGCAACGTAAGCGCATGTCGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCGCGGGGTGCGTGGATTGAAATAACCCGAGTATGTCGATATGTCTCGCCGTCCTGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCGCGGGGTGCGTGGATTGAAATGCGCCGTATCTGATGCACTTGGGCTAGAGGTCGGAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATATGGCACGAAGGACTTCCGCGCCGTCGGAAACGAGCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTACTGTTACTCCGGTACTTGATACGATGTCAGACACCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAACGAAGAAACTTCAACGCCTTCAAGGTGTTTAGTCGCACCCCTCGCGGGGTGCGTGGATTGA # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 29147-29449 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992408.1 Clostridium sp. ATCC BAA-442 Scaffold1880, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 29147 33 90.9 35 NNN.............................. GCGCCGTATCTGATGCACTTGGGCTAGAGGTCGGA 29215 33 100.0 36 ................................. ATGGCACGAAGGACTTCCGCGCCGTCGGAAACGAGC 29284 33 100.0 37 ................................. TACTGTTACTCCGGTACTTGATACGATGTCAGACACC 29354 33 100.0 33 ................................. AACGAAGAAACTTCAACGCCTTCAAGGTGTTTA 29420 30 90.9 0 ..............................--- | ========== ====== ====== ====== ================================= ===================================== ================== 5 33 96.4 36 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCGCGGGGTGCGTGGATTGAAATAACCCGAGTATGTCGATATGTCTCGCCGTCCTGGGTCGCACCCCTCGCGGGGTGCGTGGATTGAAAAATCAGAATAGCTGCATATCTCTTTTGCAGAGTGAAAGGGTCGCACCCCTCGCGGGGTGCGTGGATTGAAAAATCTTGTTAAGGATAGGCTGCTCACCGATATTGGCAAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATATTCAGTCCCACAAGGATTCTGTTGACCTCCATAAAGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : | # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15151-14912 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 15150 33 100.0 35 ................................. GGCATTGAGACGGGGGCCAACAGCTTCGGCTACCT 15082 33 93.9 38 ............A.........G.......... AGTGAGAAATACGACATCACCAAGCATCCCCGGTATAA 15011 33 93.9 34 ............A............G....... CAGCGGCTGGACCGCGGCCACATGGAGTATGTCT 14944 33 81.8 0 .....C......A...............A.CCC | ========== ====== ====== ====== ================================= ====================================== ================== 4 33 92.4 36 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : TGTATCACCAGCGTTGAAACGGTCCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAACATAAAAGGCATAGGTGAAATCATCAAAGCCTATCTCGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAACGGCAACGGCCAGGATGGCTTTGCGCTCCTCCTCGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAACTTCATCACATACCGGGCAACGTAAGCACAGGTTTCCCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAGTAGCTCGTCAGCCTCCAGGCGCTTGTCGTTGCTCGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGGTGCGTGGATTGAAACAGGTGAAGACATCCATGGTTGCCCGTCTGCAAACT # Right flank : GTCTTACAGAGGCGCCTGAGCCGTTTACAGGAGCCACCGCATAGGGGCGCGGGTTGATTCAGATTTTTCACCCCGCGCCTCTATTGTTTGCGCTTCTTTTCGTTGACTGGTCTAGTAGGGAATGATATAATAGGATGATTATGACAAAAACTATGGTGGGAAGATTGTATTATGTGGATTTCAACTGACTGGAAGGACTATGAACTGCTGGACTGCGGCGGCGGCGAGCGGCTGGAGCGCTGGGGCAAGTATCTGTTGGTGCGGCCCGATCCTCAGGCCATCTGGCGTCCGGAGGGGCGGCATCCCGGATGGCGGAGGCACGACGCCCGGTACCAGCGCTCCTCCACCGGAGGGGGCCAGTGGGTCAAGAAGGAACTGCCCCAGCGCTGGACATTGGGCTACAAGGGGCTGACTCTCAACATCAAGCCCATGAACTTCAAGCATACCGGCGTCTTTCCAGAGCAGGCGGCCAACTGGGACTTCGCCATGGAGCGCATCCG # Questionable array : NO Score: 6.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 2 15695-15313 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 15694 33 90.9 36 NNN.............................. TGGAGGGCAGCTGTATCACCAGCGTTGAAACGGTCC 15625 33 100.0 39 ................................. ATAAAAGGCATAGGTGAAATCATCAAAGCCTATCTCGTA 15553 33 100.0 36 ................................. GGCAACGGCCAGGATGGCTTTGCGCTCCTCCTCGTA 15484 33 100.0 37 ................................. TTCATCACATACCGGGCAACGTAAGCACAGGTTTCCC 15414 33 97.0 36 ................................T AGTAGCTCGTCAGCCTCCAGGCGCTTGTCGTTGCTC 15345 33 87.9 0 .............................NNNN | ========== ====== ====== ====== ================================= ======================================= ================== 6 33 96.0 37 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAC # Left flank : GGATTGAAATTGTGTCATAGCCTGAACGTCATAGCCATAGCGCTGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCGCGGGGTGCGTGGATTGAAATATCAAGAGACCCTGGCCTAACAATAGCACCAGAGCCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTACACTGAATGGGCAAGCAACGCAAAGGCTTGGGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAGAAACTTTATGAGAAGGATGCAAGAGGAGGTACGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCACCCCTCGCGGGGTGCGTGGATTGAAACAGGTGAAGACATCCATGGTTGCCCGTCTGCAAACTGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATGGCATTGAGACGGGGGCCAACAGCTTCGGCTACCTGTCGCACCCCTCACGGGGTGCGGGGATTGAAATAGTGAGAAATACGACATCACCAAGCATCCCCGGTATAAGTCGCACCCCTCACGGGGTGCGTGGGTTGAAATCAGCGGCTGGACCGCGGCCACATGGAGTATGTCTGTCGCCCCCCTCACGGGGTGCGTGGATTAACCCGTCTTACAGAGGCGCCTGAGCCGTTTACAGGAGCCACCGCATAGGGGCGCGGGTTGATTCAGATTTTTCACCCCGCGCCTCTATTGTTTGCGCTTCTTT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 16026-15788 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 16025 33 87.9 36 NNNN............................. ATCAAGAGACCCTGGCCTAACAATAGCACCAGAGCC 15956 33 100.0 36 ................................. TACACTGAATGGGCAAGCAACGCAAAGGCTTGGGTA 15887 33 100.0 34 ................................. AGAAACTTTATGAGAAGGATGCAAGAGGAGGTAC 15820 33 87.9 0 .............................NNNN | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 93.9 36 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : CGTGGATTGAAATTATCAAATTCTTTTGTAGCTGGCGCAGATGTTATCCAGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCGCGGGGTGCGTGGATTGAAATCCCTTCTTCTTCACGGGGGGCTCGTCGTCGTCGTGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCATGATAGCGTTAGCGAAATTACGGGCAGCGATAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTGTGTCATAGCCTGAACGTCATAGCCATAGCGCTGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCGCGGGGTGCGTGGATTGAAACTGGAGGGCAGCTGTATCACCAGCGTTGAAACGGTCCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAACATAAAAGGCATAGGTGAAATCATCAAAGCCTATCTCGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAACGGCAACGGCCAGGATGGCTTTGCGCTCCTCCTCGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAACTTCATCACATACCGGGCAACGTAAGCACAGGTTTCCCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAGTAGCTCGTCAGCCTCCAGGCGCTTGTCGTTGCTCGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.56 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 17139-16899 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 17138 33 87.9 38 NNNN............................. CTCCACGGCCACCCGCAGCACCGTCAACACCTTCTGTA 17067 33 100.0 35 ................................. CTCTCCGCTATATTTGCTTGTGTAAGACCCGTCGC 16999 33 100.0 35 ................................. ACCGGGGCAGTAAGTACTTCATACATGGCGTCGTA 16931 33 81.8 0 ...........................NNNNNN | ========== ====== ====== ====== ================================= ====================================== ================== 4 33 92.4 36 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : CGTGGATTGAAATAGCAGGCCGCCGCCCAGCAATCGGTCTAAGCTCCGGGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCGCGGGGTGCGTGGATTGAAATCGCTCCCGCGCGGCGACCGTCTCGATGATCGCCAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAAAATGCTTTGAGCATAGCTTGCATTACAAACACGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCCCAGCAGTCAGACCCTATTGGGGAAACAGGTCTCGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGGTGCGTGGATTGAAATCCTGTCTTTGCTGTTTCGTTGGCACACTCAATCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCCCCCTGTGGCAGAATAAGACGGTTGATGAAATTGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTGCTATGCGTGCTCTTGACGAATTGGAAGTTGAGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCGCTACCGTCTGTCCTGTATAGAGCCCGCCATAGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTATCAAATTCTTTTGTAGCTGGCGCAGATGTTATCCAGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.40,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 17862-17557 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 17861 33 87.9 35 NNNN............................. CAACAGTTTATGCAGCAGATGAAGGGCAAAGACCC 17793 33 100.0 33 ................................. CTGAGATTTCCGCTTATTCGGAAAAGGCTTGGC 17727 33 100.0 36 ................................. CTCTTGTGCTTTCCACCTATGCGGGAGGTGTAGGAC 17658 33 100.0 36 ................................. AGCAGGCCGCCGCCCAGCAATCGGTCTAAGCTCCGG 17589 33 87.9 0 .............................NNNN | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 95.2 35 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : GGATTGAAATACTTTTCTGTTGTAAACGTCTTAACAAAGATTTCGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCGCGGGGTGCGTGGATTGAAATTGTTGAGCGGTTCGCCCGTCGTATGTGGACAAGTGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATGATAGGCTGTTTGACTTGGAGCAACCGGAGCTTATGGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATATTATCACTTGCAAGAATAGCGGAAGCATGGAGGCCGTCGCACCCCTCGCGGGGTGCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCGCGGGGTGCGTGGATTGAAATCGCTCCCGCGCGGCGACCGTCTCGATGATCGCCAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAAAATGCTTTGAGCATAGCTTGCATTACAAACACGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCCCAGCAGTCAGACCCTATTGGGGAAACAGGTCTCGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCGCGGGGTGCGTGGATTGAAATCTCCACGGCCACCCGCAGCACCGTCAACACCTTCTGTAGTCGCACCCCT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 18194-17953 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 18193 33 84.8 34 NNNNN............................ TGTTGAGCGGTTCGCCCGTCGTATGTGGACAAGT 18126 33 100.0 39 ................................. GATAGGCTGTTTGACTTGGAGCAACCGGAGCTTATGGTA 18054 33 100.0 36 ................................. ATTATCACTTGCAAGAATAGCGGAAGCATGGAGGCC 17985 33 84.8 0 ............................NNNNN | ========== ====== ====== ====== ================================= ======================================= ================== 4 33 92.4 37 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : TGGATTGAAATTGTAAAAAGGTGTTTGATAGATTATTAACAAAAGGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCGCGGGGTGCGTGGATTGAAATAAGTAGTATAATTGACCCCTTGACAATATGTCGAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATATAAAGCACTAAAAAAGCCCAACCTCCTGCACCTGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATACTTTTCTGTTGTAAACGTCTTAACAAAGATTTCGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCGCGGGGTGCGTGGATTGAAATCAACAGTTTATGCAGCAGATGAAGGGCAAAGACCCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCTGAGATTTCCGCTTATTCGGAAAAGGCTTGGCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCTCTTGTGCTTTCCACCTATGCGGGAGGTGTAGGACGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATAGCAGGCCGCCGCCCAGCAATCGGTCTAAGCTCCGGGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCG # Questionable array : NO Score: 8.48 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 18522-18352 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 18521 33 90.9 34 NNN.............................. AAGTAGTATAATTGACCCCTTGACAATATGTCGA 18454 33 100.0 37 ................................. ATAAAGCACTAAAAAAGCCCAACCTCCTGCACCTGTA 18384 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 3 33 97.0 36 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : TGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCGCGGGGTGCGTGGATTGAAATTTTGGTACAGGCCAATATTAACAAGGATGTTTACAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCATATTTGGCATGAGTTACAACACCAGATTCACAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATATTTTTCACTCCCCACCATATAGCAGGGTTAATCCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTGTAAAAAGGTGTTTGATAGATTATTAACAAAAGGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACTTTTCTGTTGTAAACGTCTTAACAAAGATTTCGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCGCGGGGTGCGTGGATTGAAATTGTTGAGCGGTTCGCCCGTCGTATGTGGACAAGTGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATGATAGGCTGTTTGACTTGGAGCAACCGGAGCTTATGGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATATTATCACTTGCAAGAATAGCGGAAGCATGGAGGCCGTCGCACCCCTCGCGGGGTGCGTGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCC # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 18919-18683 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 18918 33 84.8 35 NNNNN............................ TTTGGTACAGGCCAATATTAACAAGGATGTTTACA 18850 33 100.0 34 ................................. CATATTTGGCATGAGTTACAACACCAGATTCACA 18783 33 100.0 35 ................................. ATTTTTCACTCCCCACCATATAGCAGGGTTAATCC 18715 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 4 33 96.2 35 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : GTGGATTGAAATTCTTGTATTTGCATCAATTAACGAAAATGACCAATGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCGCGGGGTGCGTGGATTGAAATATATAGATCATCATTAAACAAACCAGCTCTTGCAAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCAATTTTAAATTGTTTGATGAAAATAAAACAAACGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTATACTTTCAAACACAGTTAAAGACGGCGCTCTTGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGTAAAAAGGTGTTTGATAGATTATTAACAAAAGGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCGCGGGGTGCGTGGATTGAAATAAGTAGTATAATTGACCCCTTGACAATATGTCGAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATATAAAGCACTAAAAAAGCCCAACCTCCTGCACCTGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATACTTTTCTGTTGTAAACGTCTTAACAAAGATTTCGTCGCACCCCTCGCGGGGTGCGTGGATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.40,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 19178-19011 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 19177 33 100.0 34 ................................. CAATTTTAAATTGTTTGATGAAAATAAAACAAAC 19110 33 100.0 34 ................................. TATACTTTCAAACACAGTTAAAGACGGCGCTCTT 19043 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 3 33 97.0 34 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : TCCTGGTCTCATACCAGTATATAGTAATGTGAGCAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATACAAGTGCAGGGGTTAACCACTTTGTATCATCTGTAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTTTCTTTTGAGGCAACTATTTCACCACCTTTTAAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTTTGTTAATATAAGGAGGTGTTAAAGTTGCCGAAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTCTTGTATTTGCATCAATTAACGAAAATGACCAATGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCGCGGGGTGCGTGGATTGAAATATATAGATCATCATTAAACAAACCAGCTCTTGCAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCGCGGGGTGCGTGGATTGAAATTTTGGTACAGGCCAATATTAACAAGGATGTTTACAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCATATTTGGCATGAGTTACAACACCAGATTCACAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATATTTTTCACTCCCCACCATATAGCAGGGTTAATCCGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTGTAAAAAGGTGTTTGATAGATTATTAACAAAAGGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCT # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 19708-19339 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE992354.1 Clostridium sp. ATCC BAA-442 Scaffold1654, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 19707 30 90.9 35 ---.............................. TCCTGGTCTCATACCAGTATATAGTAATGTGAGCA 19642 33 100.0 36 ................................. ACAAGTGCAGGGGTTAACCACTTTGTATCATCTGTA 19573 33 100.0 34 ................................. TTTCTTTTGAGGCAACTATTTCACCACCTTTTAA 19506 33 100.0 34 ................................. TTTGTTAATATAAGGAGGTGTTAAAGTTGCCGAA 19439 33 100.0 35 ................................. TCTTGTATTTGCATCAATTAACGAAAATGACCAAT 19371 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 97.0 35 GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCGCGGGGTGCGTGGATTGAAATATATAGATCATCATTAAACAAACCAGCTCTTGCAAGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATCAATTTTAAATTGTTTGATGAAAATAAAACAAACGTCGCACCCCTCGCGGGGTGCGTGGATTGAAATTATACTTTCAAACACAGTTAAAGACGGCGCTCTTGTCGCACCCCTCGCGGGGTGCGTGGATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCGCGGGGTGCGTGGATTGAAATTTTGGTACAGGCCAATATTAACAAGGATGTTTACAGTCGCACCCCTC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGCGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //