Array 1 1306705-1307527 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058333.1 Pseudomonas aeruginosa strain ACR20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1306705 29 100.0 32 ............................. CGGGAAGAGAGGAATCCATGCCAGACCTTGGC 1306766 29 100.0 32 ............................. TTCATGGACGACCCAGGCGAAGGCCAGTACAT 1306827 29 100.0 32 ............................. GGCAAAACTTGGGTTATCGACCCTGACTTCAA 1306888 29 100.0 32 ............................. TGGCACGAATCGTCGTAGCAGGCTTGGACGAA 1306949 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 1307010 29 100.0 32 ............................. TCGATGCGAGACTCCAGCCCGGTACGAGACAT 1307071 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 1307132 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 1307193 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 1307254 29 100.0 32 ............................. CCTGCATCAGATGCGGCCTCCTTCACGCGGGC 1307315 29 100.0 32 ............................. CTGCTCCAGGGCAGCAATTCCAACGGACTGGG G [1307329] 1307377 29 96.6 32 ..A.......................... ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 1307438 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 1307499 28 79.3 0 A..........A..C..-.....A....T | C [1307503] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.5 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGTTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGAGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATCGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1317084-1318515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058333.1 Pseudomonas aeruginosa strain ACR20 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1317084 29 100.0 32 ............................. GGGCTCTCGAGATCCTGATTGACAGGCACCGC 1317145 29 100.0 32 ............................. ACAAAGGGCGCGCGCGACCAGCTTACGGCGGC 1317206 29 100.0 32 ............................. GCGGAGATCAGTATCAGCACAGACTGGACGGA 1317267 29 100.0 32 ............................. AAGGGGCGGCTCTTCAATTGGCAGGTCGAGAT 1317328 29 100.0 32 ............................. CCGGTGCTCGCGCCGGCGCTTGCGGGCCTGCC 1317389 29 100.0 32 ............................. TGGAATTGAGCGCCGGCAGCAGAACGGAACCG 1317450 29 100.0 32 ............................. AACTGGGACGTTCGCAGCCCCATGATTTCCGC 1317511 29 100.0 32 ............................. TCGTTCGGCTCGTTGAATGCCACGGCAATGGC 1317572 29 100.0 32 ............................. TTGTTCCTATGAAGAAGCGCGAGGACCGATAT 1317633 29 100.0 32 ............................. GTTAATCAGGACCGGCCAGCATCGCATTTCCC 1317694 29 100.0 32 ............................. CCGGCACATGATGGAGAAAACCGATGTACCCA 1317755 29 100.0 32 ............................. GTAGGCGACTTCCTCAATACCGGCGGCGGAGC 1317816 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 1317877 29 100.0 32 ............................. ACCTTTCCGACGACGCACTGCGCGTTGATATG 1317938 29 100.0 32 ............................. CGAATAAGCAAGCTCGATGCCGCCTAAGAAGC 1317999 29 100.0 32 ............................. GACTTGCGCAGGTTCGAAAGCGGTGTGCTGGA 1318060 29 100.0 32 ............................. AGCACCGAGGTAGAGGTGGCCATCTGTCGGCC 1318121 29 96.6 32 ...................A......... CACGACGTAGAGACCATGGTCCAGAACCTGAT 1318182 29 100.0 32 ............................. CTGCCGATGCAGCAGGTCGATTTCCTTGTAGT 1318243 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 1318304 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 1318365 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 1318426 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 1318487 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTGGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4135121-4133951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP058333.1 Pseudomonas aeruginosa strain ACR20 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4135120 28 100.0 32 ............................ TGCCGGTAGCAGGGCATCAACAGACCAAACAC 4135060 28 100.0 32 ............................ GTCGACGTCGATGAACGCCGCGCACGGATGGA 4135000 28 100.0 32 ............................ TTGCTAAGCATCCACTGTGCCGCTCCTGTAGC 4134940 28 100.0 33 ............................ ACGTATCAGGCATCGTACTCGGCAAGGTGTTCT 4134879 28 100.0 32 ............................ TGCGGAAGGGGCCGGGCTGGCGCTGGCACCAG 4134819 28 100.0 32 ............................ TTGATGGCGTTGACCAGCTCCTGCACCTGGTC 4134759 28 100.0 32 ............................ ACGAAGTGACCGTGGTCCGCCGACAGGGAGGC 4134699 28 100.0 32 ............................ ACATGGGAATGCTCTCCTGGCACGAAGAAACG 4134639 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 4134579 28 100.0 32 ............................ AACCGCAGATGGCGCTGGACCGGGGCGTGCCG 4134519 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 4134459 28 100.0 32 ............................ TCGGACAAAGACAGCCTCCGGTCATAGGGTAG 4134399 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 4134338 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 4134278 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 4134218 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 4134158 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 4134098 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 4134038 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 4133978 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.9 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGTTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGAAAGGCGAAACAAGAGGCCAAGGCAAGCACGACGCCCGCTCAAGCGCTAAGCAACAGCTTCCCCCCTTAGTGCCGTGCAGGTAGCGACGGGAGCTGGGGGCCAGTGCACGCATTCACGGCCCGCCAGGCAGTCCCCGTGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //