Array 1 1433060-1431997 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDI01000001.1 Klebsiella sp. J-Nf11 NODE_1_length_1960538_cov_13.4031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1433059 28 100.0 33 ............................ CAACGAACCAGCTTAAATTCGCACATAGCACCT 1432998 28 100.0 33 ............................ TCTACCTGTCAATCCTGCAATCCTGCCGGGGGG 1432937 28 100.0 33 ............................ TAAAATCGCCGGGTGGGAGGACTGCCGCACCGT 1432876 28 100.0 33 ............................ TTTAATTACATCAATGCCGGCTAGTGTAATCTC 1432815 28 100.0 33 ............................ CAGATGGTCCCTGGACAGCCCTTCCAGTGCTGG 1432754 28 100.0 33 ............................ CAGATGGTCCCTGGACAGCCCTTCCAGTGCTGG 1432693 28 100.0 33 ............................ CATCCGGCGCCTTAACGAGCACTACCGATCCTA 1432632 28 100.0 33 ............................ TCCGGAGAACGCAAAAGCGGGCAAGGCGATTGG 1432571 28 100.0 33 ............................ TGAAGTAGCCTTTTTATTATTCCTGAACAATCC 1432510 28 100.0 33 ............................ CGTGCCGGTGAGCACGTCGCCAATGCGCCCCAT 1432449 28 100.0 33 ............................ CGTATCACGACTGCCTGGTGAACCTGCTGGATA 1432388 28 100.0 33 ............................ CCACTACGTTTGTGGCTCCATCATGCAGCAGAT 1432327 28 100.0 33 ............................ CTTTGTCGGCGGCGGCGGGGCCAGTACCGGGAT 1432266 28 78.6 32 ...............TG.....G.G.CT ACGTAGAGATAAACCCGGCCCTCTTTATCGTG 1432206 28 96.4 33 ..............T............. CGGGGCTCACCTGCGTAGTTGTTGGCCGTCAGC 1432145 27 89.3 33 .........G....T......-...... CATGATTACCTCGTATCAGAGCGGCCGCTATCT 1432085 28 96.4 33 ..............T............. TCTCTTGATACTGACTCGGTGCCCGAGCGAGAC 1432024 28 71.4 0 ..............T.....AC.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 18 28 96.2 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGAGCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : ATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGATGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAACAATAACGGCGAATGATTATTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGCCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACTCCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGACTACAAATTGGCTGGCTTGTTGGTGTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGAC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1442024-1441813 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJDI01000001.1 Klebsiella sp. J-Nf11 NODE_1_length_1960538_cov_13.4031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1442023 28 100.0 33 ............................ TCGAAGAAGTCGAGTCTGGTGCATTTGATGGCG 1441962 28 100.0 33 ............................ TGAGGGGATACAGAAAGAAAAACTACCCTTTCC 1441901 28 100.0 33 ............................ CTTTCAGCAACAAGCGGCTATCGTTCGGATTGA 1441840 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTACGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCATCAGTACGTCGCGCTACGTTCAGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGAGGCGGGCAGGCAAGTAGGGTATATCGGTTTTGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAAGGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGGAAGGGGATTCCTGACGTAAAGGCATCAATGCCGTGACATAGTTATCCTTAATGTAGATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATATTTTTTATATGATTTTACTTATAAATATTCGTGAACTATGTTTGTTCTATACTTTCTTTAGGGACATCTAAATCGTTCGAGTTTCTTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAATTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGCGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAATTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGACCAGGGTTTCGCTACAAAATCAACATGCCATAGCGGCGATAAGTTTTGAGAACTGCCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //