Array 1 235048-236195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPH010000001.1 Streptococcus oralis strain KK26 Soralis_KK26_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================== ================== 235048 29 100.0 40 ............................. TTTGAACGTCATTATACCAGTCCCTGTCCTCTTTGCTACT 235117 29 100.0 45 ............................. GTCTCTCTTGTGGTCGTAAACTTGTGGGCTGCTAATAATTAACTC 235191 29 100.0 48 ............................. TTAGCATCTGCAAGACCTACACCATTCAAAGCGTCTTCTGCATTTTAA 235268 29 100.0 39 ............................. CGTTTCAAGTAGTTTGAGTACAAGTGCCTCACAACAATC 235336 29 100.0 42 ............................. TTTTCGCTTACGGCTTCATCGACTACTTTAATGAAAATATTC 235407 29 100.0 45 ............................. TAATAGTATGGCTTGCCTGCATAAGCCCAGCGTTCGTCGTGGTCG 235481 29 100.0 48 ............................. TATATTATACGTTAGGTTATAGCCCGGCATCCAGGAAAAATTTGATGT 235558 29 96.6 50 ........C.................... GAGAGCCTTGAACTCTCCACGTTTATTGGTATTTTTCCAACACACTAAAT 235637 29 100.0 51 ............................. TTTTCGAAAGGTGTGGATAAATTCAATCTTGGTTCCACACGGAGCTATTAT 235717 29 100.0 47 ............................. TCGCAGGATCTAAAAACTATATATTGCCCTGTTGATAATTTGACATA 235793 29 100.0 45 ............................. ATTTTGTTTATTAGTAAAGTACTTTCCATTTTTGTTCCTCCTTTT 235867 29 100.0 50 ............................. CCAAATGAGGAGCGCACTAGTGGGAAGCCGTCTATCTCTCCCACCGGTTC 235946 29 100.0 47 ............................. AATTACTAAATACTGCAATTAATTCCTTGAATTTACTTTGTTGGTCT 236022 29 100.0 40 ............................. ATTGGACAGCGTCCTATGAATTGGTCTTCTTTACCGTTTT 236091 29 100.0 47 ............................. TCACCTCCCGCCCTTAAAAAGCGGGTCTTTCTTTCTTTTTGCTTTTC 236167 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= =================================================== ================== 16 29 98.9 46 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : TTTTGCAATACGATTTTGTATAGTCGTGTTCTGCGCTTGATCTGGCAGGCTAGACTAGATCCTAAAATCGGAGTGCTGCATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCAGTTATCGTGGATCGAGTGATTTTGAGCTTGATCAATAAACATCAAATCAATACTACAGATCATTTTGAAGAAAGGGAAGACGGATCGGTTTATCTGAATCGTGAAGGGAAGTATATCGTCTTGCGAAGTTTTGAGGAAAAGCTACAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATACGGCAGTTTAAGAGAATATTGCAGCAAGATGGGGACTTGAAACGCTTTAAACCCTACAAATACTATTAAAAAGATCGACCGACTTTTTTCATCGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATACTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCATGAGGAGATATCTTACTCGGAGGTTGTTTATGTCTGAGAATCAATCTATATATAGTCACCATATCTTTATCTTACCCTTTGCGGCAAAGGGGCTGGAGTCTTTTCCGAAGTCTTCCAATTGGAAGAAACTCAGCCAAGATACCAATGAGCTTCCCTATCTAAATTTAGAAGATGCTGAAAAAAGTGAGCGATTAAAGTACGCTTATCGCCGATATTTTAATAAAGAAGCAGAGGAGCTGATTTTCCGTAATCCTGAACTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCGACAAACTTGAGTGTTATGACCTGACACTTGACTATATCATGCTTCGTTATTTTCCAAACTTAGAAGCAGGTTTTCTGATTTTTTCAATGGGAAATCGTCTCTATGAGAAAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 237878-238499 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPH010000001.1 Streptococcus oralis strain KK26 Soralis_KK26_NinaOddballs_Sia_NO_1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================= ================== 237878 25 100.0 57 ......................... TCCTTGCTGTTAAGCACTTTCCATTCCACGTTGTACCCCAACTCATCCAAGGTGTCC 237960 25 100.0 49 ......................... TTATCAAGCATAATCTGGCAAAAGATATCCAAAATCTTTTCAAAAGTTC 238034 25 100.0 49 ......................... AAACGTTCGAACCCTTTTTCAACTTTGCGGTCTGTTTTTTGGAATGTAA 238108 25 100.0 54 ......................... ATATTGAGCCAAATTTTGCTGAAGCTACTCTTTGTTTGATATGCTCATAAGTAA 238187 25 100.0 44 ......................... ACCCAAGCGTCTATCAACGCAGCAACATTATCGATTTTTTGTAA 238256 25 100.0 48 ......................... GTTTCAAACTTAGGAATGTTGTTTACTACAGTTATAGTTACTTCGTTA 238329 25 100.0 48 ......................... GGCAGGCTAAACTTGCAAAGCATAGATATAATAAAACAAAAAGCGTTA 238402 25 100.0 48 ......................... TTTTCTTTGTTAGAGCGTACCAACTCTTTAATACGGTTTACAACGTAA 238475 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================================= ================== 9 25 100.0 50 TACCTTACCTATAAGGAATTGAGAC # Left flank : TCTGATAAACTAAAGCTGCAGAAGGCTTACACGACCTTTAAAAATCAATACCTGCTTCCGGAACTTTGCCCGCAGGAGCAGGCGATTGAAATCTACGAATTGCTGCAAACTTCTCTCTATATCGAGAAGCATATCAATCTCCTGGACAGTCAAATCAGTGAACTACATGATATCAGTCAGACGGAAGCAAGCAATAAATTGAATGACAGAGTATTAGTACTCACTGTTTTAAGTATTGGATTAGCAATCATTCCGAATATCAAAGAACTGCAGGAACACTGTCTGACGATTTACAATCTGAGCCTGACGTATTCATCTTGGCTTACTTTGCTTATTCCTCTTTTGACAATTGCTTTTATCTATTTCAAAAAGCGAAAATAAATGTATATTATCTGGACATACGATGTTCATCACAAGCGCGTGGCTAAGATTTTGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTTGTTA # Right flank : CACTGTCTTTCATTTTAATTATGTGGATTTTGATGGTTTTTAAGTTCTAGATTACCTAAAAAATATTGTCCGTGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCATGTCTGCTGGGAAGCCTGAAAATTTGTTCGCCTTTTGTTTCGTAAGAATTATCAAGAAAAGCTCTCTTAGTAGGAGAGCTTTTCTCGTGTTTCAACCACGATAGTATAGAGCTTAAGTTAGATAGCTGGTCAGTTTTTGTTACTTCATGATAGTATTGCGAATATTTATTGGTCTATTGGGTTAAATTAAAAACATTCTTTTCTATTTCATTTACCGAAAAAGAACAGCTATCCAACAGTCAATCCTTCTGTACTGGTCCTTTTTCAGCTTATCTATGGTATAATAGGAGATAGATTTATCAATTGGAGTATGAAGGATTTTATGATTAAACTTGTAGCAACCGATATGGATGGAACCTTTCTTGACGGAGAGGGGCGGTTT # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 16682-18893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHZPH010000004.1 Streptococcus oralis strain KK26 Soralis_KK26_NinaOddballs_Sia_NO_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 16682 36 100.0 30 .................................... ATATTTTTCATCTGGAACGGCAAAGTTATT 16748 36 100.0 30 .................................... GGGAGTGCAATACTTCTCTATGGCCAACAA 16814 36 100.0 30 .................................... GAAGTATCTGTTTAAGAGGTTCATCGACAA 16880 36 100.0 30 .................................... GGAAGCCTATGCTAATGCGTGGCAGTTCTC 16946 36 100.0 30 .................................... TTATTCTGAAGCCAGACTATGCAGTCAAAC 17012 36 100.0 30 .................................... TGTGGTCAGCAGTTCTATACCTGTAGCCTG 17078 36 100.0 30 .................................... TTGCGTTTTGCTTATCAATTGGCATACTGT 17144 36 100.0 30 .................................... CAAGGTATTCCTGGAGCAGCTGGACGCGAC 17210 36 100.0 30 .................................... AATGAGTTATAAGAATTACAAGCGACATCT 17276 36 100.0 30 .................................... TTATTCTGAAGCCAGACTATGCAGTCAAAC 17342 36 100.0 30 .................................... TTTATTCTTAGCTAATGTAATACATACGTC 17408 36 100.0 30 .................................... CTAGGCTTTTTTCCTTCTTTGGATTGGGGT 17474 36 100.0 30 .................................... TGTGGTCAGCAGTTCTATACCTGTAGCCTG 17540 36 100.0 30 .................................... TTGCGTTTTGCTTATCAATTGGCATACTGT 17606 36 100.0 30 .................................... CAAGGTATTCCTGGAGCAGCTGGACGCGAC 17672 36 100.0 29 .................................... CCAGGCATATTCTCCTTTTGGGGTCTTAG 17737 36 100.0 30 .................................... TGTTTTAGTTGCTCCATCTAAGACCCCAAA 17803 36 100.0 30 .................................... CTGCGCTGGTGTGTCCGCTGGCATAACGGC 17869 36 100.0 30 .................................... TTTTGCATGCCTGAATAACTCATATTTATA 17935 36 100.0 30 .................................... GAGCAAGTACGCTTGCCTTGTCCATGTTAG 18001 36 100.0 29 .................................... TATTTTAAATGGGTTAGCCAATTTGAATT 18066 36 97.2 30 ..............C..................... TTCTGCATACCTGAATAACTCATATTGACG 18132 36 97.2 30 ..............C..................... AGATTCTCTAGTAATTGGGAAATAGCGTTT 18198 36 97.2 31 ..............C..................... CTTCTGCCTTCTGTTTCTGTTCCTTAATTTC 18265 36 97.2 30 ..............C..................... ATGTTATCAATTTTGAGACAATGGAAAGCA 18331 36 97.2 30 ..............C..................... AAATAACGACCTTCACCTCATGCAATCTAC 18397 36 97.2 30 ..............C..................... GAAAATGCCGACCGTAGAAGTCGAAGAAAG 18463 36 97.2 30 ..............C..................... ATGTGAGATTTGGGGTGTATGTTATAAGCA 18529 36 97.2 30 ..............C..................... TAAACAAGTGAAAGGTATTCTTGCTTCTAA 18595 36 97.2 30 ..............C..................... CAGTCGTCCGCTTCCTTGCTTTCCATGTAT 18661 36 97.2 30 ..............C..................... ATGAAGTATTTAAAAAATATCCAATCGACA 18727 36 97.2 30 ..............C..................... TCGCATTTATTACATAGCACATAATAGAAA 18793 36 97.2 30 ..............C..................... CCACTGTTCCTGAATCAAAGCGACATTTCT 18859 35 88.9 0 ..............C..............-....CT | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 98.7 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAACCAGAAGTCAAATCCATGATTGAAAAGCTGGTAGCTACGATAACAGAATTGCTGGCATTTGAGTGCTTGGAAAACGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCGTTAGGGGTCAAAGTGGAAACTCTAAGTGATACACCTTTTGAAAAGATGCTAGAAATTGTTCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTTTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGAGTCTTATTTGTTGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGCTGGATCAAGACTATTTCTTGAATCCTGAAAATATGGTATAATAAGAGTAACAATTGGAATCAGACGAACTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : TTACATAAAAAGCTACTCAAAAAATGAGTAGCTTTTTAACTATTCCAACCCTACACATAGCTCATTCCCTTATAGCAAAGGAAAACGGCTAGTGCGATAAAAAGTACGGTTGCCCCGATTCGCTGGCTGGTACTATACATCTTTCTCTCCCATTTAACTGGAAAAATGACTGCTAGAAAAGCACCGCCTACTGCACCACCAATATGCCCTGCTAGGCTGATTCCTGGAATCAGAATACTTCCAATGATATTTATAACGAAAAGCGTCAGGTAGGATTGCCCTAACTGCTGGATATAGGGGCTGCGAGTCGCATAGCGCAAAACGATAATCGCAGCAAATAGTCCGTAAAGAGAAGTGGAGGCCCCTGCTGCTAGGACTTTCGGTGTGAAAGCAAACACAAAGAGGTTGCCCATCATTCCTGATAAGAGATAGAGAAAGAAAAACTGCTTAGAGCCGAAAATCTCCTCCACCTGTTGTCCAAGAAAGTAGAGAGAAATCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //