Array 1 1986038-1986340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMM010000001.1 Bradyrhizobium sp. U87765 SZCCT0048 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1986038 32 100.0 36 ................................ GCGCAAGGCGCAGCGCCGGTCATCGCGCAGCAGGCC 1986106 32 100.0 36 ................................ ATGTTGAAGTGCTCGCCTGTCGCAAACATGATCCGT 1986174 32 100.0 35 ................................ CCCCAAAACAGAAAGTACCCGGCGCGACGATCAAG 1986241 32 100.0 34 ................................ GTATTCACGCCAGTGCCAAAGTAGCTCAGCGGAA 1986307 32 96.9 0 .............................T.. | GC [1986335] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 99.4 36 GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Left flank : GGTTCTGGTCCGACCAGGGACCGGCGAAGCTGCAGATGGTCGGCCTCGCCCACGGCGCGACACGCCAGGTGATCAGCGGTGCGGCGGAGGACGGCGCATTCTCGATCTACCACCTGCGCGATGACGAACTGCTGGCGATCGATTCCATCAACCGCCCCGCCGACCATATGCTCGGCCGCCGCATGCTGGCGTCGGGCTTCCATCCCGGCGCCGCGCTGATCGCCGAAGGCCCGGCCGCGCTGAAAGCCGCGTTCGCGGAGTTCGGCAAGGCCGTGCCGAGCGCGCGCTAGGATCTTTCCGAGCCGTCCGCCCTCGGTTGTGGCGCGAACCTGAAGCATGCCGGGATTTCCCGGCACCTTCGCGCTCGATCTAACACCCTGAAACATAACAGTATTCACGACCAGCCCCGCGACCTCGGCCAACCTGCAGCGATTTTTCACGACAGGTTCGCGCAGACGCCGCCTTTTCGCCAGCAAGCCGAACAGGTTAAAGGCTGAGCA # Right flank : CGTCGATCGCGCAGTCGGGCCCCATACCCCTGCCCACCAGACCCGCACAGAATACCATCATCGGAGTTGACCACCCTTACCACGACAGAAGACTTGACGAGGCAGCCTCCAGTTTCCACACTTGGAGAATTCGATTTTTTGTTCTTTCGAAGCTCCGCCATTTTCTGCTCCGGCTTCATTCATCCGTCGATTGTCCTCCCTCCGGCAGCGCCATGCACTACGCGCATTCGACCAAACGCGCTGATCGCTCCGACTGGCAGCGGCTTCTCGATCATCTTAACGCAGTCGCACGCCTCGCTGCGGAACTGGGCAACAAGTTCGGCGCAGGCAGGGCTGCAGCGCTGGCGGGGCTTCTCCATGATCTCGGCAAGTATGCGCAAGCCTTCCAGATCTACATTGGAGGCCACGGACCGAGCGTCGATCATGCCACCGCCGGTGCCCAGCAAGTGCTGAAACTGCCGATCGAAGGGCGCGACAGGGCGATCGCCGATCTGCTGACC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTTCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1994510-1996016 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCMM010000001.1 Bradyrhizobium sp. U87765 SZCCT0048 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1994510 32 100.0 33 ................................ TGCGATCTGGTCGAACACTAGAAGACGGGGGAG 1994575 32 100.0 35 ................................ ACCTGAAGATTGCTGAGACCAGCAAGCATCAGATT 1994642 32 100.0 37 ................................ CGGAAGCATATAGCCTTCATCGATAAAGACGCCGATG 1994711 32 100.0 36 ................................ GCCACCACGCTGGCTACCGTGAACGCGTCGCCAGGA 1994779 32 100.0 34 ................................ GCAGCGCGGCTTCTTCGGCGGCGCGGTCCTGGCC 1994845 32 100.0 35 ................................ CTCCAGCGCCATCCGGTCTCAACGGCCTTCTGAGC 1994912 32 100.0 33 ................................ TACACGTGGCGGGAACTGCGCCGCGGAAATCGA 1994977 32 100.0 36 ................................ ATCGATGGCGATCTTGGGCGAGTTGAAAGCAATCGC 1995045 32 100.0 34 ................................ AGAAGCTGCTGGCGATGGGGGTGGACGGCGCGGG 1995111 32 100.0 35 ................................ GATAGATTCTGCCGGAGTGAAGACCCCATCCGATT 1995178 32 100.0 36 ................................ AGAATCTGCAGCCGTATCTCAATCAACAGGGCGCGG 1995246 32 100.0 36 ................................ GGCGCGATTGATCCACGCGCTCTTGCGCACGAGGAT 1995314 32 96.9 37 ......................A......... CTTCTGCCAAGCTCGCAGCCATTCGCGAGCGAGGAAC 1995383 32 100.0 34 ................................ CACGGAGACGTGCAATATGACCTGAAGCCAAGCC 1995449 32 100.0 35 ................................ CGCTATTTGATCGCCACGTCCTCGTTCACGGTGAC 1995516 32 100.0 34 ................................ AGACCCGGTCTCACCGGTCCCCGCAAAGTGTCGC 1995582 32 96.9 35 ......C......................... TCCGCCATCAACGCCTCAACGTCCTTGCCTCCACT C [1995586] 1995650 32 100.0 34 ................................ TTCTGGTTCGTCGATGCCAGCCTGTCGGCTCCAG 1995716 32 100.0 35 ................................ CAGATTTCGGGTTCGGCGACCGATCAGGGCGTGTG 1995783 32 100.0 35 ................................ GGCTCGCAGATCGCGATGAGATCGCGCAGCCCCTC 1995850 32 100.0 35 ................................ AAACCATCGTTGTTTCCTATTTCGGGGCGACTGCT 1995917 32 93.8 36 ............................C.G. CAGGTCACTGTGCCCGGGCTCTGTCGGGTGACGTTC 1995985 32 87.5 0 ................G.......T.GA.... | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 98.9 35 GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Left flank : TTCTGGAAATAGCGAACTCATCATGCTCGTCCTTGTGACCTATGACGTGCGTACGAGCGAGCCGGGCGGAGAGGCGCGCCTGCGGCGCGTCGCCAGAGCCTGCCGTGACTATGGCCAGCGGGTCCAGTTTTCAGTTTTCGAGATCGAGGTCGATCCGGCACAATGGGCCAGGCTGAAGGCCCGCCTTGAGGGCTTGATCAAACCCGAGCATGACAGCCTGCGTTACTATTATCTGGGTGCCAACTGGCAAAGGCGCGTGGAGCATGTGGGCGCCAAGCCCGCAGCCAATCTCGGCGGCCCCTTGATCGTCTAACAACCCCGGCGCGAACCGCAAGCGCACCCGAATCTTCCGGGATGTTCGCGCTCTCCGTAAGACGCTGATGATAAAATAGAATCCGGCGACATATCACTCACAGCACAGACGCAAAGACGATCAGCGCGACCACTTCGCGCAACGGACATAATTTCCCATGACAACAGAATAGGTTAGAGCAGGAGCG # Right flank : CATCGCGCAGACGGCGTGAACGTATGTCGCCTCCAGGCACCTGGCATTGCGTATGTGCTGCGCAGCACCACGAATATCCCCCGCTTTGAACGATTCCAGCGGCAAGGCCACCAGAAGGGATTATAGCCGCCAAGCGGATATGCCACACACACCGTCTCCTCCACCGGTCCGACGCACCCCGCGGTTCACCCGGTGCGGGCGCGACCGACGGTGAGACGATGACCGGACCGACCCTGCGCCGCTGGCTGTGGGTGCACAAGTGGACCAGCCTGATCTGCACGCTGTTCCTGCTGCTGATCTGCATCAGCGGCCTGCCGCTGGTGTTCCGCGACGAGATCGGCGACCAGCAGGATGACGGCCTGCCCTATGCCAGCGTCGGACTGGATGCCCGGAGCGTAAACCTCGACGAGGTCGTCGCGACCAGCCGCAAGATGTATCCCGGTGAAACCATCGTCTCGGCGTTCGTCGACGACGACGAGCCCAGGATCATGGTGTTCATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCCCGCGGAGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //