Array 1 567792-568673 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019796.1 Rhodothermus marinus strain AA2-13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 567792 28 96.4 33 ...........................T TAACAGAAAGGGTGTGGGTTTATAACCGCGGGG 567853 28 96.4 33 ...........................T CTTATCCGCATGGGAAAGGATCTTGCTCTGAGG 567914 28 100.0 33 ............................ TTCATTTCTTCCCGGCTTAGCGGATCGACAGGG 567975 28 100.0 33 ............................ GATCTCGCGCCCGGTAAGCTTGGGCGCGAGATG 568036 28 100.0 33 ............................ CCCTCGCCGGCCGCCATCGTGATTCTCGTTACG 568097 28 100.0 33 ............................ CGGGCGATTTCGGATTTTTTCGCTTTGTACATG 568158 28 100.0 33 ............................ TGCTGGAGGTCTGATGCTGAGCGGCTACCGTCG 568219 28 89.3 33 ...C........A..............T CTGCACCAGGTCGCGCATTTCATCGTCGATGCG 568280 28 92.9 33 ...C........A............... ACGAAGTCATCAGGCACCACCGGCACCCGGTTG 568341 28 96.4 33 ...........................T CTTCCGGAAGGTTGAACAGCAGAACGCGCGCCG 568402 28 100.0 33 ............................ CTTTAAAGGTTGTGGCGTTTGGTTTCGTGTGCG 568463 28 100.0 33 ............................ GGTTTGAAAGGCTTGGGCGCGAAGTCGGCCAGG 568524 28 96.4 33 ...........................T TCTATCGAGTCGGGATCGATGATGCCCCGCCAG 568585 28 100.0 33 ............................ CAAACCAACAGAGCCATGAGATCGTCTCTCACG 568646 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 33 GTGTCCCCGCACCCGCGGGGATAGTCCC # Left flank : TACATCAAGGAACTGATCGATGGCCATGACGATCGCCGTGACCCGTAACACGCCTGGCCGCTTTCGGGGCTTTCTGGCTTCCTGCATGCTGGAAATAGCACCGGGCGTGTATGTGGCGCCCCGGATGCCCCGGGATGTGCGTGAGCGGGTCTGGCAGGTCCTGCTGTCCTGGGCCGAGTTGATTCCGCCAGATGGGGGTGTGGTGCTGCTCTGGCGCAATCGCAAAGCGCCTTCTGGTCTGGATATGCGGCTATTGGGCTGGCCCAAAAAGGAGCTGGTGGAGTACGAAGGATTGTGGCTGGCGTGGCGTGGGTTGACGGCGGCGCACGACGTGGAGGAGCTTGCTCGACTGGTGGAGGCCGAGGAGCCGCCGCTTGAGGCGGGAGATCCGATCCTGCGGCTGGTGGAAAGACCGGACCTGGACGAAGAGGAGGGATCGTCTCTCTAATCAATCCTTAATTGTCCTTTTTTTGCCGCGGTTATGCCATAATGGCATAGAG # Right flank : CGCGGTCGATGCGGAAAAACCTCGAGACTGGCGTCGCATCGGTCGCAAATACAGAAAAAGGCTGCTGCACATAAAGCAGCAGCCTAATAGGTGACCCGGGCCAAGCACCGCGCTGCCCTCCCGGGTACGCCGCGCGCTTCGACGGGCGCGACCTCCACGCGCGACGACATGGTCTTACAAGAAGTAGCTTGACAACGGTTCCATGTCTGTACGGATCATCGCCCATCTGGACGACAAAGCCTTCCAGGCGTCGGTTCGAGAGCTGCACCGGCGCGTGCGTAACCTGCGTTCGCGGTGCCTCGCATACGCGGGGATCGTTCCGTCGAAAGGATGCCGCCGGATCGGCCGCGACTTGCAGAGAAAAGGGCTGCTGCACGTAGGGCAGCAGCCCGGAGCGTAATCCAGACGAAGCGCCGCGCCGCTTCCGGATACCCCGCGGGTTCATCGGGCGCGGCCTCCCCCGCAGGGCTACACATTACAGGTGACTGCCCGCAGAAGGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCCCGCACCCGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1680847-1682484 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019796.1 Rhodothermus marinus strain AA2-13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1680847 30 100.0 36 .............................. CAAAACCGATATCAAAGTTTTCACGGAGGTTGTTGG 1680913 30 100.0 37 .............................. ATCAGGAAGTTCGTCTACAATCTCATAGTTTCCGGAT 1680980 30 100.0 37 .............................. CGATTTCTCCGTTCACGTCAATGAGCATTGAATAAAA 1681047 30 100.0 38 .............................. TCTGGATGGAAGGTGAGAAAGCCTATAAGCGGCTTCCG 1681115 30 100.0 36 .............................. TCGCGTCGGTGCCGATGCGCCGAGCGCCGAGGTGCC 1681181 30 100.0 38 .............................. AGCGCCAGGTTCGGATCGCAGTAGATCACGCCGCGCGC 1681249 30 100.0 38 .............................. ACGTGGCCGTCGAAGCCAAGCGCCAGGACGCGCCGGTC 1681317 30 100.0 38 .............................. TGCGATGCACGCGACGGACGCACAGCAGGCGGATGCCC 1681385 30 100.0 37 .............................. ATCGTCTTTTCCGTGGAGGCGGACGCCGATCAGGCGA 1681452 30 100.0 38 .............................. TCACGCCTTCGCCGCGTCATGGAGCCTCCTGCGCGCGG 1681520 30 100.0 35 .............................. GACGCAGACGGCTCAGGCTCTTCGCCTTCCGCCTG 1681585 30 100.0 40 .............................. AATGGTAGCCTTTCCGGAAAAGCCATACTCCGTCCACCCG 1681655 30 100.0 37 .............................. TTCAACCTGGTGGTAATATCGGACGGTCTTAAGTAGA 1681722 30 100.0 36 .............................. TGCGAAGCACGGCGGCAATGACGCCACTCGCCACAT 1681788 30 100.0 36 .............................. ACGAAGGTCAGATGCGCCTCGTCGGCGCTCGAGAAC 1681854 30 100.0 37 .............................. TAGTAGAAGGAGAGCGGGCCGCTGGCCCCGCGCTTGA 1681921 30 100.0 37 .............................. GCTACGGCCACATGGTTCGGCCCCACGAGCAGTTTAC 1681988 30 100.0 36 .............................. AGCGCAAACGGTCCGCGCGCCGCCGTGCGCGCGCAG 1682054 30 100.0 37 .............................. ACGCCTATGCCAGGGATGCTGGCTACGAGAGCTTTGG 1682121 30 100.0 37 .............................. CGCTTGATCCGTTCGCGAATGCGCTTACGGGTAGCTT 1682188 30 100.0 37 .............................. TGGAAGATAAAGGCGGCCACCAGCGAGCGTTTTTCGG 1682255 30 100.0 37 .............................. CGTAGAAAACGTCCGTGTCGACGTCTTCCAGCGATTC 1682322 30 100.0 37 .............................. CCGAGCCGGCCAGAGCGTGCCGTGCTCCAGCCGCTCA 1682389 30 100.0 36 .............................. CCGGTCTTCGGATGGACCTGGCGGTAGCTCCGCCAG 1682455 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 37 GTTTGTAGCCTACCTATGAGGGATTGAAAT # Left flank : AGAGTAGTTATGCGACCAGGGCTACCTTTAGTGCTTTCAACTGCTTTGCAGCGAGATTCTCTCCTTCCCGCTGTTGCAACAACAGTAGAAAACACGCTGCCGAGCGGCGATGATCCTGCATGAGCTGTCCCTTCTCATTATTCCGCGTTGGTGGCAAATCGTTTGCCATGGTCAAAGCGTTTGTTCCGACAATCATAAATATGCCCATCGTAACTCTGAAATCGATATTGCTATTTTCTTTTCGCCCCAAAGGATCGGCATACACCTCCAACACCACTTCGACCCGAACTTGCCGCTTTCATTTTAGAACTCCGAGCACTGTCAATAGGGGGTAATGCTGCCAGAATTGGTGTCGTCGATGTAGAATAGCGTTGTAGCCTCCAGCGATCGACGACATAAAACGAAGTAAAAGACCCTTTCCGGGAAACAAAAAGGCCTGTTTTGTTCTATGATTGAATGGATCGGATCAGAAATGTTGCTGAAATACATAGTTTGCTTGG # Right flank : TACATGTACCTGCGCGGAATATCGGTTACGGAGATCGTTTGTAGAACTTATCCGGAAAATAGGGATACTCTGTAATCGCCACGATAATCGGAGCGGCCTCATGAAACTCACCGACGCACAATGGGCACGCATCGAGCCCCTGATCGTCTCCCCTCCTAAACGCCCTGATCGACGCGGCCGTCCCCGACGCGCCGACCGCGAGATCCTCGAAGCGATCCTCTGGATACTCCAGACCGGCGCTCCCTGGGCCAAGCTCCCCGCCCACTTTCCGCCCAGGTCCACCTGCCACGATCGCTTCCAGGCATGGAACCGAAACGGCACCCTCCAACGCATTTTGCAGGTGTTGGCCGAAGAACTCCACCAACAGGGCAAGCTCAAGCTTTCGGAGTGCTTTATCGATGCCTGCTTTGTCGCTGCTAAAAAGGGGGGACGTGTGTGGGCAAGACAAAGCGAGGTAAAGGAAGCAAACTCATGGCGATAGCCGATGCCAATGGGATGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1683359-1683792 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019796.1 Rhodothermus marinus strain AA2-13 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1683359 30 90.0 35 AC..C......................... ACATGTACCTGCGCGGAATATCGGTTACGGAGATC 1683424 30 100.0 37 .............................. CCGAGCACGCGGCCGCATTCCCAGCAGCGGATTTCGA 1683491 30 100.0 36 .............................. ATCTGACAATATCCAGCAGGCGTCCATACGTAAACC 1683557 30 100.0 38 .............................. TCGTAGAAGACGTCCGCGTCGACGTCCTCCACCGACTC 1683625 30 100.0 39 .............................. GACTGAGAAAACAGCTCTTGCGCCTGGGCCTCGAGATCG 1683694 30 100.0 39 .............................. GAGCGGTATCGTGATGAGCTGGCCAGGGGTGCGCGGTTG 1683763 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 98.6 38 GTTTGTAGCCTACCTATGAGGGATTGAAAT # Left flank : CAAGCTTTCGGAGTGCTTTATCGATGCCTGCTTTGTCGCTGCTAAAAAGGGGGGACGTGTGTGGGCAAGACAAAGCGAGGTAAAGGAAGCAAACTCATGGCGATAGCCGATGCCAATGGGATGCCGCTGGCGGTGCTGGTGGCCAGTGCTTCGCCACATGAGACCCGGTTGGTCGAAGCCACTCTGGCGGCTCGTTTTACCGAGGCCAGGCCAGTACGTTTGATTGGAGATCGGGCATATGACAGTGATCCGCTGGATAAGGCATTGGCGCAACAGGGTATAGAGATGATTGCCCCGCATCGGCGGAATCGGAAGCGGAAAAAGACGCAGGATGGGCGTAAGCTTCGTCGCTATCGACGCCGTTGGAAAGTAGAGCGGTTGTTTGCGTGGTTGGGGCATTTTCGCCGGATTGTGATGCGTCATGAGCGCTACGCGGAAAACTACCTGGGTTTTGTATTGCTCGGGTGCCTCATGATCTTCTTGAGAACCTTTTTCGGATG # Right flank : TCCGTGGCGATCTGAGCGATCGGTTGTCACTCTATGCAGTAGTGATTATAATTAGGGGCAGGAGGTGAACCATGGCTCGAAAAGCATCACCGGACAACCCACCCTGTCCCCGTTGTGGCGACAAGCACACGGTCCGCAACGGCCATAAAGACGGCCGCCCGCGCTGGGTATGTCGCGGCTGCGGCCGTTCCTTCGGTCTCACCCTGGGCACCCCGATGTATCGTCTGCGCACCCCACCGGCCGAAGTGGCCCGTGCCCTGCTCATCGTCATGCGGCGGGGGAGTTTGAGCGCCGCCGAGGAGATCACCGGCCACAAGTATGAGACCATTGGTCGCTGGCTGCGTCGGGCGGCACACCATGCGGAGGCCATCACCTAGGCCCTGGTGTGCGAGCTCCAGCTGAGCCAGCTGGAAGTAGACGTCTTCTGGTCGTTTGTTAAAAAAAGCGGGGCGCGCTTAGAAGTAGGACAAGCACGCCGGACGGGGTGGGCCCGCGCTGGG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1706069-1705337 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019796.1 Rhodothermus marinus strain AA2-13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 1706068 37 100.0 39 ..................................... ACGTCATCGAGGCGCAGCCCGGGCGCCGGGCACGTTCTC 1705992 37 100.0 54 ..................................... CGAATGTAGGCGAGCATCTCGCTAAGCAAGCGGGCCGTTTTGTTTTCGTACTGC 1705901 37 100.0 36 ..................................... ACAGCCATGGACGCCAAGTTCTACCGGGTCAATGAA 1705828 37 100.0 37 ..................................... GCTTGTAGGCCTCCCAGCTCAAAAGCCGACGCTCTTT 1705754 37 100.0 36 ..................................... CTGTCTCCCTCACAATGTTGTAGGGCAAGTTCTTAT 1705681 37 100.0 43 ..................................... TTGGATAGGATCGGAACCGCTCAAAACGAAAATGGACGATTTT 1705601 37 100.0 39 ..................................... CGTCTGGATCGACGCTGTCGTGAACGATAAGACTATCCA 1705525 37 100.0 36 ..................................... GGTAATGCGCCATAAATATTTCTTTCACCGTCTTCA 1705452 37 100.0 42 ..................................... GGTTAAAGATATGTTCAACAGCCCGCCGCCGTTCAAAAAGAA 1705373 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================================== ================== 10 37 100.0 40 GTCTGAAGACCTGACCCGATGAAAAGGGGATTACGAC # Left flank : AATGGCCCTGGCCGGCATCTGAAGCGGAAGCCACCGCCGAAGAGGAAGAAGCCGCCGAGGATGACTCGGACCTGTGGTTGGATGAGATCGGGCCCAAGAGCCAGGACATCGTTGCCGAGGTGGTGGACAACAGTCGTTCACCGTTTACGATTCGTGTTTTTGTGCGCGGCCTGGAGAATGAAAGGTTTCCCTGTGGGGGCGCCAATCACAGGGTGCTTGAAGTGGGGCAGCGTATCCGGGTACAGGTGGCCCAGTGGAACAAGAAGGAGGGACGCCCGGCCATGTTCAGGGTGCAGAGCATTCGGGTTTGATTCCGCGAGAGGTTGACTTCTATGGCCTGACTGTTTATAATGCGATCAGGATGGAGGAGGGGGTGTGACACGGAATTGTCACAGGGTTTTCGGAGCAAATTCTATTCCGTTTTTTGACGTGTTGTTGGCGAAAAAATCGGCCTTTTTGAGGGCAAACAGGCCGGTTCCAACGAGCCCCGTAACAATGGG # Right flank : GAGGGACGTCGCCATTCATGAGTCGAGGGTTGACAACAGCTGAAGTTTGAGGTATCACTCATAGAACTTTATGATATTTCTGTGGAATTATGAAGCTGTCCGATTAGGCCAGCAAGCACGGCGTCTCTTACAAGACGGCGTAGGACTTGTGACCGTATGGGCTGGCCCACCTGACGGGCCCTACCGCGAGTTCCGCGGGAAGTGACGCCTGTGGAGACTCCTCTGACGGCGGAACCCTCCGAGTCATGGGTCGATGAAGCAGGAAGAAGTCCGGGAATAAAATTCCATGGATTTCGGAACGGCACGTGTCTCTGGATCCGAGTTGATAAAGCATGGCGGTTTGGGTCTGACGCGAGGCGCCTTTCAAGTGGTCGTTGGCCTTGTGTAAAGAGGTGGTGCTGCGCAAACGACTTCTTACACAAGGTTCTGGTCTCTATGCGGCTTTGAGCGTCAGACGGACAAGATTGGCACTTCAGGAGGGGCGGACACAACCCGGTCGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAGACCTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 5 1714378-1713541 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019796.1 Rhodothermus marinus strain AA2-13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================= ================== 1714377 38 100.0 42 ...................................... CCACCACTGCACACGGTGGTTCAGAATTGCTGTCGATAATGC 1714297 38 100.0 42 ...................................... TATGCTACCCCAACAGCCAAACAACGCTCGCTCTTAGCGAAA 1714217 38 97.4 44 .....................................C CAGCGCGTGACGTCATACGATTTCACCGCTCAGTTTTCGCTGAA 1714135 38 100.0 39 ...................................... CATTACTTCGTGTAGGCAACTTTTTGGAGTCCGCGTTCA 1714058 38 100.0 42 ...................................... GGGATGCGGCGCTCCGTGAGTTCGGCGTGATGCTCACTTTCC 1713978 38 97.4 39 .....................................C GGTTACGATGTACTGCATAACACCTCCATTGTTTTGTGC 1713901 38 100.0 36 ...................................... CGGAGTGCCTGCATGATGGCCGCCTCCGGTCTTGTG 1713827 38 100.0 45 ...................................... ACTTCGCCGTTCCCGCAAACCGGAAGACCTGCACCGCCGAACCGT 1713744 38 100.0 45 ...................................... ACTTCGCCGTTCCCGCAAACCGGAAGACCTGCACCGCCGAACCGT 1713661 38 100.0 45 ...................................... ACTTCGCCGTTCCCGCAAACCGGAAGACCTGCACCGCCGAACCGT 1713578 38 92.1 0 ..................................A.AA | ========== ====== ====== ====== ====================================== ============================================= ================== 11 38 98.8 42 GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGACT # Left flank : AGATTAATGCGCCGATGGATGAAGCCTAAGGGCGTTCGGGCAGGCGCTTTTCCAGGCGCCAGCGGCCGCGTCCCAGCCGGATGTAGGGCCGTCCGGAGGGCGTGCGTCCGATGCGCAGACCGCGGGTGCCGATGCTCAGGCCGATTCCCCGATGGCTGATCGTCAGCCGTACGGGACCCAGTCGAAACGTGCGGTACAGGTGCAGTGGCATGGTGCGCATTAAGGTTTTTTTCAGGGATGCACCGGATCAACGTGCAGGGCGCGTCCGGGATGCTTTTCCGAATTTCCGAAAAAGGGAGAGAACTTCGGCGAATACGGGGCTTGACATTCCGCTGAAAATCACTTATGCTTCGACGTGTTCAGAACGGAAGGGGTGTGACACGGAATTGTCACAGGGTTTTCAGAGCAAATTCTATTCCGTTTTTTGACGTGTTGACGACGAAAAAATCGGCCTTTTTGAGGGCAAACAGGCCGGTTCCAACGGGCCCCGTAACAATGGG # Right flank : AGACGGGCGCCTTTCGGCAGGGGAAGTCCGTTGATCGGGAGGCTTTCTTTGCACTCCAGAGGCCCGGGGTCTTGACAGCAAAAAGACCGCTTGCTTTTCTTTGCTATAAGGATTTGACGGAGTTTCTGGAGCTCAGTGCATGTCGGTTGCGCGTCGTCAGGGTCCGGTACTGATGGCCACGCTGGGCGAACAGCCCCAGGTGGTCACGCTGACGCTGGATCTGCTGGCGGCGCAACGAATGGAGGTGGAGGAGTTGGTCGTGTTTCACACGGCTGCTCACTATCCGGCACTTCGCCGCTCGCTCGAACTGCTCGATGCGGAGCTCAGGCAATGGCCGGCCTACAGATCGCTGACGGTCCGTCGTGTGCTTTTGCGGGATGAAGCCGGTCGGGAGTTGACCGACGTGCGTACCGAGCAGGAAGCGCGGCAGGTGTTTCGGATACTTTTTCGGGAGGTGCTGGAGGTCAAACGGCAGCGGCGCCCGTTGCATTTTCTGATCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGACT # Alternate repeat : GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 1731514-1730758 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019796.1 Rhodothermus marinus strain AA2-13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 1731513 37 100.0 45 ..................................... CCCGGCGGACCGGTTGCTGAGCCACGGCGGAGACCAGATGATTGA 1731431 37 100.0 38 ..................................... ACGAAACGCTTCCCAAGCTGATCGAAGCCGTTGCCGAA 1731356 37 100.0 40 ..................................... GGAGAAACGGTGCTCACCGAGACGGAGGCAAAAATTGGCG 1731279 37 100.0 39 ..................................... CAGATAGCCAGCCACCGCCCGGCTTACCTCGCCGGGCCG 1731203 37 100.0 36 ..................................... AAGATAGATCATGGCAAGCCCGGCACATACCATTCG 1731130 37 100.0 52 ..................................... GCTGTAGTAACCGGACCAGCGCGCAGGTGAAGGTCATCTCACCCATGACGTG 1731041 37 100.0 47 ..................................... GCGTTCCAGAATCTCGGCAGCCTCCGAGAGTTCGGCCAGTGCCTCTA 1730957 37 100.0 47 ..................................... CTGTTCGCGCGGTTCGTGTAACCCAGGATATCCTGGGCTACGCGGTG 1730873 37 100.0 42 ..................................... CTGCGTGGCCCGCCTGCGCATGAGCGGGCCCATGTCAGCCAA 1730794 37 73.0 0 CC.....G..T.....T..........A...AG..TT | ========== ====== ====== ====== ===================================== ==================================================== ================== 10 37 97.3 43 GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGAC # Left flank : GAGGCGGAGGTGAATGCCTGGCCCGGGGCGTTCGATCTGGAAGTGAGCTGTCTGATCGAGGTGGAAGCCGAGCGCATCTATGACGAGGTGGAGCGTATCTGCGAAACGATCAAAAGCTGGGCGCGCTCGCATCTGAACGGGCGCGAGCCTTACGGCTCGATTTCATGGAAGGTGCCTCGCATGTTAGTGGGGCGAATGCGGATTCGTTACGAAGAAGCCCGGGAGTTTATGAATCGGCGGCGTGAGCGCATCTGCGCGCAGGTCCAGCAGCTCTGCAACTGATGTCGGAGGGGTGGCCGGCTTCGGCCACCCCTCTTGACATTCCATTGAAAAACACGTATGCTCCCTGGCAGATCGATGCGACCGGGAGAGGGTGTGACACGGAATTGTCACAGGGTTTTCGAAGCAAATTCTATTCCGTTTTTTGACGTGCTGACGGCGAAAAAATCGGCCTTTTTGAGGGCAAACAGGCCGGTTCGGATGGACCCCGTAACAATGGG # Right flank : GATAGTCTTGGGTGTAAGGTCGCTCGTAAGAGGTAATGCTCTGCGGTTGATCTTCCTGAAAGACCTTTTTATTTTCCGGAAAGGCTGGTGTATTGGGCGCGCCAAAAGTTTCAACCTGGAGATCAAATGAATGAGGTGCAGCCGCTTTTCACAGTGGGATATGGCACTTCCTCAATAGAGGAGTTTATCAATGTGCTCAAACAGTATGAAATTAAATGCATTGTGGACATACGCTCGAATCCTTATTCAAAATTCAATCCCGACTTTTCTATAGGAACGCTGAAGAATCATTTAGAAAAAAATGGAATTGCATATGAGTACATGGGGGATACTCTTGGGGGTAAACCTACAGACGAAAGCTGCCTCGAAAACGATAAACCGATATTTTCTGTAATAAAAGAAAAAGATTTTTTCAAAGAGGGAATTCGGAAGTTACTTTCGTTGTGGAGATACTATCAGCCACAGCGAATTGCTCTAATGTGTGCCTGTCAGTATCCTGA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 1739137-1737827 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019796.1 Rhodothermus marinus strain AA2-13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================================== ================== 1739136 37 100.0 39 ..................................... GTCGAAATCTGTAAGAAAAACGTTGCGCGTCTTTGTCGA 1739060 37 100.0 42 ..................................... GGCCTCAATTAACCACCGCCGGAAGACTCTCCTCAACGGCTC 1738981 37 100.0 42 ..................................... TGCGAATGCTCCGGAGATTGTCCAACTCGCCGCTCTGGTCCA 1738902 37 100.0 39 ..................................... CCAATCGAACGGAGACGAGCCATGACGGCGACAACTGAG 1738826 37 100.0 42 ..................................... TCTTACGGTGGCCCTCGATAAGCTGAAGGGGACCGTGAAGAC 1738747 37 100.0 37 ..................................... GCCAGGTGCTGCCGAGCAGTCGGACGACGTGCTGGCT 1738673 37 100.0 40 ..................................... TCGAACACGTGGAGATTCTGGAAGCGCCGGTTGTTCTCGA 1738596 37 100.0 38 ..................................... GTCGACTGTTTCGCCTGGGGATAGAGCCCGCTCAGCAG 1738521 37 100.0 63 ..................................... CATTCCCGCGCTTCGGTAATGATGAGGTCGCCGAGGCGCACAAATTCTCCTTGCTGAGGGGCG 1738421 37 100.0 40 ..................................... CGTTTACGTCGGGCAAGTTTTCGACTGAAACCCGGGCGGC 1738344 37 100.0 42 ..................................... AGCAGGAAGTGCTGCTGAATGTCCTCAGCTGCTTCAATTCGT 1738265 37 100.0 44 ..................................... CCGGTAGAAGGCGAAGCCATGATGGCTCTCTCGCGGCGGGCCAA 1738184 37 100.0 37 ..................................... GCCATTCCCTTTCAACTAACTTCATCGCCGAGCTCAA 1738110 37 100.0 41 ..................................... ACGGCGCTTACGCAATCCTCGTCCGCATATTGTACGGCCAG 1738032 37 100.0 52 ..................................... TCAACGACTTTGGCGTTGACGTCATTCACGCACACGGGACACTGAACAAACA 1737943 37 100.0 43 ..................................... CGATTTCTGGTTGTGGGTCTGGTCCTGGCTATCCGCACCTCCT 1737863 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================================== ================== 17 37 100.0 43 GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGAC # Left flank : ACCGGCGGTGTCGCGGGATCGCTGGCCGGGTTCCCCGGAGTTGAGCTATCATATGCTGGAGGCGCTTGGCGATCCGGTGGGGCAGTTGTTTGCCCGACGGCGTTCGGTGTTGCGCGAGGCGCTGGAACGCTGTCGCGACTCTCTTCTGCTGGCGGGTAGTGCCGCGCTTGACGAACAGGAGTACGAAGCGGTGCGCAACAGGCTGGAGGGTTTTCTGCACGAAGCGGCCCGGGTGGTAGCGGAGTCGCTGCGCGCGCCCCAGTTGCCGCGTTCGGAGGTGCTGGAGTGGGTGGAACTCGGGCCGGCCGGGGCTTGACATTTTAGCGACAGAGGCTTATGCTCTGGAGTGTACAGGGAGGTAGAGAGAAAGGGGGTGTGACACGGAATTGTCACAGGGTTTTCGAAGCAAATTCTATTCCGTTTTTTGACGTGCTGATGGCGAAAAAATCGGCCTTTTTGGCGGCAAACAGGCCGGTTCGGATGGGCCCCGTAACAATGGG # Right flank : TTTCGGCGGGGCGTAAAAGCGAAAAGAGGCCTTTATCTTTGCTTCAGCGCCTGTAGCACTTCAGGAAAGGCTTCTCAGCATTCGATGGGCTGAACGACTCATGCGTCTGTTCTGATGGCGTTTTATTGTAGCAGAAAATATGCCCGCAGAAGGCTTCGTAAAGGCCAGTTCGGATGATTATCATTATCTGGTTGCTGCTCGGAATAGGTTCTCTTGCATTTCTGATCTATCGCTACAATCAAGTCTGTCGAATATGCCCTGAGTTAAACATATTGATATTTGCCCTTACATTGCTCTTCTTGCTCGTGTTTTATCTTCTGGGATCAGAAATCGTGCTCGTGCCTGAATGTGCGATTCTGCTTATTGTTATTTACTTTCTGCTTATTCTGTGGCGCTTTTTCGTCTGTGATAAGATTCTGTTTATTGCAGCAATAGTCACTATTGTTTCTTTTTTTTAAGTTTGATGACGAGTTTTATAAAGAGCATTATTATTCGTCGGG # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAAACCTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 8 2080689-2074726 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019796.1 Rhodothermus marinus strain AA2-13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 2080688 30 100.0 36 .............................. TCGTCGAGCAGATCCAGCAGCGCGCGCTCTACCTGC 2080622 30 100.0 37 .............................. ACGTATGTTCCCCGTCGCCGGGCGATGACCTTGTCGC 2080555 30 100.0 36 .............................. ATACGTCAAGGGTTGTTTCGTGAAGAAAACGTGAAG 2080489 30 100.0 37 .............................. ACGAAGATTTTGACCTTCATGGCTCTACCCTCCAGTT 2080422 30 100.0 37 .............................. GCATAGTCGACCGCCCGGACGGCGTCCGATGAAGAGA 2080355 30 100.0 42 .............................. CGTCGGGCATATCGATTGCGATTCGAGATTGAGTCCGGGCAA 2080283 30 100.0 37 .............................. GGCGATCGTGCCGGAGATGGCGGCGGCGGTGCAGACG 2080216 30 100.0 37 .............................. CTCGTTGGGCACGTTGCGGCGTTGGTAGAGATACCAC 2080149 30 100.0 36 .............................. ACATTATGAACGAACTCGCCGCCGACAGCGGACTAC 2080083 30 100.0 36 .............................. CCGTGACCCAGTAGTAGTAGGTCGTGCCGTAATCGC 2080017 30 100.0 35 .............................. CTCTTACTTTCAGCTTCATCGTAGCATCTGGATGA 2079952 30 100.0 35 .............................. GCTTCAAACCACGTGCCGAACGGGCGCCCGCTCTC 2079887 30 100.0 37 .............................. TTTGCGGCGGCGCTTCGGCCGGTCATCAGACCCGCCC 2079820 30 100.0 36 .............................. GCGTGTGGGAGGGCACGCTCGTTGTTCCGCTCACCG 2079754 30 100.0 38 .............................. CAGAGTCAGCCCAACGGCGCGGCATTCCCGTTCGATTC 2079686 30 100.0 36 .............................. TTATGTTTCGTTTAACCTGCGCGGAGAAGGCGACGG 2079620 30 100.0 38 .............................. CGTGGTGCCCGTGACGGGCGGGCTGGCCGATGAGGCCA 2079552 30 100.0 36 .............................. GACGCTGAAATGCCCGGAATGCGGCTCAGAAATCGA 2079486 30 100.0 40 .............................. GTCCGATCGTGTCCGTCCCGAGATGATCTGAGCCGCTCTC 2079416 30 100.0 38 .............................. GATTTTATCTTTGCGGATACGAACTGATTTCGGCAAAG 2079348 30 100.0 37 .............................. AAGACATCCGCGCCTGGAAGCAGGCGCTGGAGTGGTC 2079281 30 100.0 36 .............................. GATGCCGAGCACATCCAGGAAGGCCGCGCAGAAGAG 2079215 30 100.0 35 .............................. TCAAGGCGCTGCGCAAGGCGCAAAAGGCGGCGCTT 2079150 30 100.0 35 .............................. TATTGTGTTGGGTGAAGCATGCGACGATATGCAGA 2079085 30 100.0 37 .............................. GCTGATCTGCACCGTTGCGCCTTGCTGCTCCAGAAAA 2079018 30 100.0 41 .............................. GCTGATCTGTACCGTCGCACCCCGTTCCTCCAGAAAGGCGG 2078947 30 100.0 35 .............................. TGACGGTCGTGGCTGCAGGCGACGGCACGGCGCCC 2078882 30 100.0 35 .............................. TGCGTCAGGTATGGCGGTAAGCTGACGATTACGGA 2078817 30 100.0 37 .............................. GTGAGTCATTTCAACATACGCGGCACGCCGTCGCCCG 2078750 30 100.0 37 .............................. TGCTCAGACAGATACCGGGACAGCAGCAGAAAGCGCG 2078683 30 100.0 37 .............................. TCTTGATGTAGGCAATAGGATCGGCATTGAGCACGCG 2078616 30 100.0 37 .............................. TCACCGCAAGTTCGATTTCGGCGGCGTGCTCATCGAA 2078549 30 100.0 40 .............................. CACGCGTTGACCGTTTACGGATTATGGATCTCGTCTTCGT 2078479 30 100.0 35 .............................. GTACCGTCACCTCTTCATCCATCCCCGCCAGCCTC 2078414 30 100.0 38 .............................. CTTCAAGTCCAGTTCGTCGTAAGGGTACGCCCGGAGAG 2078346 30 100.0 37 .............................. GAAGCCATGAGAGCCGTTCTGACGCGAGATCTCCCGT 2078279 30 100.0 38 .............................. CTCCTCCAGAAAGGCGGCCAGTCGCTTCACCTCGTTCA 2078211 30 100.0 36 .............................. GATTCAAAATCCACCACGAGATGCCGCGCGGGCGGC 2078145 30 100.0 34 .............................. TTCGAACTCGCTGTCGTAGGCGCTTCCCAGCCAT 2078081 30 100.0 38 .............................. TTTGTTTGGTTGGGTTGGTAGATGGCTGCATTGCAAGG 2078013 30 100.0 38 .............................. AACCACAGCACAGTCATGCAGACGCAGCAGACTCAGCA 2077945 30 100.0 36 .............................. TTGTGTTTGTTTTGAATGCTTCCGGCAATGTCCTCA 2077879 30 100.0 36 .............................. TGCAGCAGGCGCGCGCGGCAAGCCGCACCGTCGTGT 2077813 30 100.0 36 .............................. TCGGGATGGTAGATGATGAGGCGATCTCCGGCCTCC 2077747 30 100.0 36 .............................. CTCCTTCTTCTCCTCAATGGGTTGGATCTCCCTCAG 2077681 30 100.0 38 .............................. CACGCTGAGCGGCCTGGTCACCATTGCCATCTCAGCTG 2077613 30 100.0 38 .............................. GGTTCTGCAGGATGCGCTGTAGGTCTGATAGGAACACG 2077545 30 100.0 36 .............................. GCGTCAAAAGCCCGCTCCCAGGCTACGTTATCAGCA 2077479 30 100.0 38 .............................. GATGTGAATCCGGGCGATCTCCACGCGTTCGGTGGACG 2077411 30 100.0 36 .............................. GGGGATCGTCCGGCCCGCCCGGCTCAGATCGTCTAT 2077345 30 100.0 39 .............................. CGGCCGCACGCGCCAGGAAGTCATCGAGCAGGAAATCGA 2077276 30 100.0 37 .............................. CGTGCTCAACGCGGACTCCGACGGGGACTACGTCGGG 2077209 30 100.0 37 .............................. TTCGGAGGACGCACGGGTAGCGCCAGCCCTTCAGCTT 2077142 30 100.0 36 .............................. CGATGCGGGGCAGGTAGCCCAGTGCAAAGCGAAGCA 2077076 30 100.0 37 .............................. GACGGGCCTGGAGCAGATCACCGGGCCGCCCGGCCGC 2077009 30 100.0 37 .............................. AAGCTATTGAGGGACGCTATGATACGGAGTATGCGGT 2076942 30 100.0 36 .............................. CCTGCAGAGATGTGCTTTCATGGCTTCATCGTTCCT 2076876 30 100.0 36 .............................. TTATGGCGTGGGTGGTGAACGAGTCGTAGCAGTCGT 2076810 30 100.0 36 .............................. TCTCAATCTCGTCGATCCACAGCACGGCGGGCGCGG 2076744 30 100.0 38 .............................. CCCCGGATCGGCCAGCGTCTTCTTGTAGCGCTCCAGCG 2076676 30 100.0 36 .............................. CGATGCCGGACGCGATCGTGAGTCGTCCGAACTGAA 2076610 30 100.0 36 .............................. GCGTGAAGACGCGCGAAGAGAAAGAGAGGGAGGCGG 2076544 30 100.0 36 .............................. GGTGGCGCTGAAGCTGCTCGACAAGCGCGTCGGTCG 2076478 30 100.0 39 .............................. CTTCGTGGGGCGGCGATGGTGTGACGTTTGCGCTACGAG 2076409 30 100.0 36 .............................. ACGCTTGCCGACGTCCGCGCGCCGGGCTTTGCCGAG 2076343 30 100.0 37 .............................. CGCAGGTACATGTCAATCATGCGCTTGAGCGTCTTGG 2076276 30 100.0 37 .............................. ACAAGGGCGATTGGGGATATGATTACAGTGATTCCAA 2076209 30 100.0 36 .............................. GATTGTAAGCCGGAAGCGCGGCGTGTCTACGCGCTC 2076143 30 100.0 36 .............................. GCGTAAGGCCGGTCGGCGCGCCCGGCTGCTGATCTG 2076077 30 100.0 35 .............................. AGCGCATCGAAGCCGTCCTGCTTTACCGACCGCGC 2076012 30 100.0 35 .............................. GGCGGCCATTAAGGAAGGCAAGATCGAACCGGCGA 2075947 30 100.0 37 .............................. ACTTTGAAGAGCGTGGCGGCGACGTCACAGACGAGGA 2075880 30 100.0 37 .............................. GTCTGGAAGGATACCGATCTCGCCGGACGGCCTGCAG 2075813 30 100.0 37 .............................. TGCAGCGCCTGTATGGCTGGTCGTGGCGCAAAGCGCG 2075746 30 100.0 36 .............................. GGAGGACCCGGGCCTGGAGCGGGCGCGGCGACTCTT 2075680 30 100.0 36 .............................. CGGGCGAATACCACGCGAACACGGTGTAATGCTCCG 2075614 30 100.0 37 .............................. GGCAAACCGCCACGGCACTTCGCCCTGGCGGCTTACA 2075547 30 100.0 36 .............................. CGCGACCGGTCGCCCAGTACTGGCGCGGCAGCGCCT 2075481 30 100.0 35 .............................. TGAACGAGACCGGTCCGCCCCCGGTGGCGCAAGGC 2075416 30 100.0 36 .............................. CAAAGTTTGCCGGCGAATGACGGTGCGGCAATACCT 2075350 30 100.0 36 .............................. TTCTACTTCCGTTATTGGGATAGACGAACAACTTAT 2075284 30 100.0 36 .............................. GAATTTGAGGCGCGACTTTGAGATAGAAGTGCGAAG 2075218 30 100.0 36 .............................. CCGGTACAGATATTTCAGAGTCGACGATCCACAGAT 2075152 30 100.0 36 .............................. ATGAGGTGGAGAAGCGCATTTCGGCCGTAGCCGAAA 2075086 30 100.0 34 .............................. TCTCCACGAGGCGGGGACCACTCCCGTCCGTCGC 2075022 30 100.0 35 .............................. GCTCACGCACAAAGGCGGCCGTGCGGTCGAGCTTG 2074957 30 100.0 36 .............................. ATTTCTCGGCGAAAATTATCCCATCCTCGACAAACG 2074891 30 100.0 37 .............................. AAACGCCCTCTTCTGATTACTGGAAGGCCGGCGATTT 2074824 30 100.0 36 .............................. AGCGAGAAGCGCCAGCCTTCCTCGAGGAAGACCTCG 2074758 30 93.3 0 .........................CC... | C,AG [2074728,2074736] ========== ====== ====== ====== ============================== ========================================== ================== 90 30 99.9 37 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : TCAGTACCCAGCACCAGACGCCGGCTGTAACGGACGTCGCGCAGCTCGTAAAAGATGACCACGTCTTCGTCGGGGTTCATGAGCCGGCCGGCTTCGTGCTGCAGGCGCTGAAACTGCGCTTCGGTCAACTCGCCCTCGAAGACGGAGCGCTGCACCCAGGTCAGATAGCGCCGGAAGAGCTTAAGCATTTTGGCGACGCGCCGCACGTTGACATCGTAAACGGCAATGTAGTACGGCATCGTAACCTCCTGTAATTACGTGAGAAGTGCCCTGACTGGCGTCGTCGACCCCAAGATAACGAACTGAATTCGGCAACGCAAATGATAGGTAAAAGAAAATCTGTTGTTTTATTTCTTTTATTTTTAGCAGTTTAATAAAAGTCGTCGGACCCCCGGGGTTTCAGGGGTAACCGGAGGTCGACGACTCCGGGGACTTGACATTCCGGATCAAATCGCTTATAATACCCTCCAGAAGCCGGTTCTGCTCTTTGAAAGGCCGGG # Right flank : TTCCTCCGTCGTGGCTTTTCGGTGAGGTGAAACGAACTGTCTTGTGCATTCGAGGGGCGTTGCATATCTTGGGCGGTTGTTCAGGTTAACCGGTTACGATTTACGATCTATGAAAAGCTATCTGCTTGTGCTGCTTGTCGGGCTGTTGCTGGTCGGATGTGCCCGCGAGACTCGTCCGCTGCGTCTGGCGCCCATCTTTTCGGATCATGCCGTGCTTCAACGTCAGCAGCCGATCCGTATCTGGGGGTGGGGGGCACCGGGCGCCACCGTCACGGTGCGTCTCGATACGGTGACGGCGCAGACCGAGGTCGATACGGAGGGACGCTGGCTGGTCGAGCTGCCCCCACAGGAGGCTGGCGGACCCTACACGCTCGCCGTCGAAAGCAACGGCGAACGGCGCGTCGTCGAAGACGTGCTCATCGGCGAGGTCTGGGTGGCCTCCGGCCAGTCGAACATGGAGATGCCCCTGATGCCGCGTCTGGCGGGCTGGTCGCCGGGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 9 2277153-2276178 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019796.1 Rhodothermus marinus strain AA2-13 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2277152 30 100.0 39 .............................. ATTGCGAAGGATGGCGTGTACTACCCTGATGCCGAGCAG 2277083 30 100.0 36 .............................. TTTTTCTTGTCGTGACGGGCTTGGCGCGGTAACATG 2277017 30 100.0 36 .............................. TGTTTCATGGTGCACCTCCCGTTTGGTTTAACGATC 2276951 30 100.0 36 .............................. GGCACGTTCCGCAAAGCCATATGGACCGGGATCTTG 2276885 30 100.0 36 .............................. CCGTGACCCAGTAGTAGTAGGTCGTGCCGTAATCGC 2276819 30 100.0 41 .............................. CGTTACGACAAGCTGATACTACAGCGGGACGATCACAACCA 2276748 30 100.0 37 .............................. CTGCGTCTCGCCCAAGCGCGAAATGATTTGGCGAGCG 2276681 30 100.0 36 .............................. TTGTCTCTTCCGTGGCGGCGATTCACGACGTGGTGG 2276615 30 100.0 36 .............................. TACGAGATCCCAGATCGGTTCTGGGTCCCGCATTGC 2276549 30 100.0 41 .............................. AGCCATTCGGCAACACGGTAAACCGCCGACTGATACAACCG 2276478 30 100.0 35 .............................. CGGGACGGGCGATCTCGTCTTCGGCCGGTGCCGCC 2276413 30 100.0 38 .............................. CTTTTTCTGTTAAATAATAACGCAATAGATCAAGCGCA 2276345 30 100.0 39 .............................. TCACCTGCACGGCCGAGATCGTCCTGGACTGCATCGAAG 2276276 30 100.0 39 .............................. TGATTGTTGGGATTCTGGAAGAATATTTTGGCGAAGTAA 2276207 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 15 30 100.0 38 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : CTTGAATTGTATTTTTAGTTTCCATCCTACGGTAAAAAATAGCGGCAGAGGTGTCAAGCAGGGCTTTGGTGAAGAAACGAAAAAGTCGCATCAGTGGCACCGGCCGGTGTAGGGGCAGTCGTCGGTCCGGAACGATTTGCTTCTCATGTGCTCGTCCGAAAAGCCTCGATCGTGGGCAACTGAAAACAAGCCCCGGAGCTTGATTCTGAGACCGGTGAAAAGAAAGACTCATGCGGGCGTAAACGCTGTTTTCCTGAAGGGAAAGGTTCGTCGTCCGGTCGTCGTCCTCCGTGATAACGAGAAGTGTTCAGCGAAGATCGAGAAAGTAAATTCTGATCTTATTGTTTTAAGGTGTTGAGTTTATTCTGGTTGTAAAAAGTCGTCGGACTCCCGGGGTTTCAGGGGGTAACCGGAGGTCGACGACTCCGGGGACTTGACTTTCCGGTTCCAATCGCTTATAATGCCCTTCAGAAGCCGGTTCTGCTCTTTGAAAGGCCGGG # Right flank : GATGCAAGAAAGCCCCGGAGCAGCAGCTCACGGGGCTTTGTTAATTTCAGGACGTTTGCTGTAGACGCGGGCAGCTACTCCAGTCCCAGCACTTCCGGACCCTGTACGAAGACGATGTCCACGGGGATGCCGGCCTGCTGGATGCGGGCCAGGTCGGCGCGGAGCGTGTCGTCCATCTGACCGTAGCGCTCGATGAAGGCGGCCGTGGCGGCGTAGTCGCCGTCGCCCTGCAGGTGGAGGATCTGCTCCGAAAGCGCATTGACGGCTGTCTGCATGCGCTCGGGCACGACGCGGTAGGTGCCGGTGGCCGCATCGCGTGTGAAAGCGCCCTGCTCCTTGAAGAAATTGAACCGGATGAGGTTGGCACGGCCGTGGGCGCTGGCCGCGCCGAAGCGAATTGAGCGGAAAATACCGGCCAGGAAGGTCACGTAGTGATCCATTGGATCGGCCTCCCACTCGCCGCGATCGATCAGCCAGGTGACCATGTAGAGGCCGAGCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //